RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 DPH6Q7L8W6 267 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 COMTD1Q86VU5 262 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 OR10Q1Q8NGQ4 319 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 SPATA22Q8NHS9 363 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 MARS2Q96GW9 593 aaKnown RBP13.13□□□□□ -0.31
SHMT2-226ENST00000556825 KCTD7Q96MP8 289 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 THAP7Q9BT49 309 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-226ENST00000556825 PIGMQ9H3S5 423 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 PRDM13Q9H4Q3 707 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 WWOXQ9NZC7 414 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 RUVBL1Q9Y265 456 aaKnown RBP13.13□□□□□ -0.31
SHMT2-226ENST00000556825 SLC9A8Q9Y2E8 581 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 SCN9AQ15858 1988 aa13.13□□□□□ -0.31
SHMT2-226ENST00000556825 LOXHD1Q8IVV2 1947 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 IGKV6D-41A0A0C4DH26 115 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 OR2W5A6NFC9 320 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 MDM4O15151 490 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 LANCL1O43813 399 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 CSO75390 466 aaKnown RBP13.12□□□□□ -0.31
SHMT2-226ENST00000556825 KHDRBS3O75525 346 aaKnown RBP13.12□□□□□ -0.31
SHMT2-226ENST00000556825 AP2A1O95782 977 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 AGAP20933 346 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 AHCYP23526 432 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 ABCD3P28288 659 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 IDH2P48735 452 aaKnown RBP13.12□□□□□ -0.31
SHMT2-226ENST00000556825 MTMR1Q13613 665 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 LIPKQ5VXJ0 399 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 TSPAN33Q86UF1 283 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 ZNF227Q86WZ6 799 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 CNTN4Q8IWV2 1026 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 GPR26Q8NDV2 337 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 OR5J2Q8NH18 312 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 FBXO17Q96EF6 278 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 P2RY11Q96G91 374 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 FAM193BQ96PV7 902 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-226ENST00000556825 CDCA3Q99618 268 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-226ENST00000556825 POLDIP3Q9BY77 421 aaKnown RBP13.12□□□□□ -0.31
SHMT2-226ENST00000556825 ZNF219Q9P2Y4 722 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-226ENST00000556825 CARHSP1Q9Y2V2 147 aaKnown RBP13.12□□□□□ -0.31
SHMT2-226ENST00000556825 CHTOPQ9Y3Y2 248 aaKnown RBP13.12□□□□□ -0.31
SHMT2-226ENST00000556825 MMACHCQ9Y4U1 282 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 ADAMTSL1Q8N6G6 1762 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 A0A1W2PPE3 182 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 CXorf65A6NEN9 183 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 RFXAPO00287 272 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 GALR3O60755 368 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-226ENST00000556825 KLHL18O94889 574 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 CRYABP02511 175 aaKnown RBP13.12□□□□□ -0.31
SHMT2-226ENST00000556825 TYRP14679 529 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 SMPD1P17405 629 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 CDKN2CP42773 168 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 JAK3P52333 1124 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 NFKB2Q00653 900 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 MBTPS1Q14703 1052 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 PGM5Q15124 567 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 TMEM31Q5JXX7 168 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 ADGRF1Q5T601 910 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 ZCCHC12Q6PEW1 402 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 B3GNT9Q6UX72 402 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 DEF8Q6ZN54 512 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 MBOAT1Q6ZNC8 495 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 ZNF567Q8N184 647 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 MDGA1Q8NFP4 955 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 GATAD2BQ8WXI9 593 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 HSD17B8Q92506 261 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 LCORQ96JN0 433 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-226ENST00000556825 PRKD2Q9BZL6 878 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 CHIAQ9BZP6 476 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 CDHR5Q9HBB8 845 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 MYOZ1Q9NP98 299 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-226ENST00000556825 PIPOXQ9P0Z9 390 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 IRAK3Q9Y616 596 aa13.12□□□□□ -0.31
SHMT2-226ENST00000556825 A0A087X0M5 115 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 A0A1B0GX30 115 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 FAM220BPB1ANY3 271 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 PSMD3O43242 534 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 MED7O43513 233 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 GLP2RO95838 553 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 PIPP12273 146 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-226ENST00000556825 CSF2RAP15509 400 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 AVPR1BP47901 424 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 PPT1P50897 306 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 CCR6P51684 374 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 CCR9P51686 369 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 SEC61A1P61619 476 aaKnown RBP13.11□□□□□ -0.31
SHMT2-226ENST00000556825 TLE2Q04725 743 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 RBBP4Q09028 425 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 CTBP1Q13363 440 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 DHCR24Q15392 516 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 ARHGAP11AQ6P4F7 1023 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 MZT2AQ6P582 158 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 ALKAL1Q6UXT8 129 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 SLC29A4Q7RTT9 530 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 PLEKHH3Q7Z736 793 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 OR52P1PQ8NH57 321 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 ROBO4Q8WZ75 1007 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 ZNF707Q96C28 371 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-226ENST00000556825 LRFN5Q96NI6 719 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 ZNF599Q96NL3 588 aa13.11□□□□□ -0.31
SHMT2-226ENST00000556825 SLC2A13Q96QE2 648 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms