RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 OCLNQ16625 522 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 TATDN3Q17R31 274 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 ZNF658BQ4V348 819 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 PDZK1Q5T2W1 519 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 TMEM215Q68D42 235 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 LAMTOR1Q6IAA8 161 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 PODNL1Q6PEZ8 512 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 TMEM220Q6QAJ8 160 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 CASP12Q6UXS9 341 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 UNC5DQ6UXZ4 953 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 GDPD4Q6W3E5 623 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 HSDL2Q6YN16 418 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 ZNF730Q6ZMV8 503 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 RFPL4BQ6ZWI9 263 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 HTR3DQ70Z44 454 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 RNF180Q86T96 592 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 DDX53Q86TM3 631 aaKnown RBP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 KIF18BQ86Y91 864 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 LIX1LQ8IVB5 337 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 LRRC56Q8IYG6 542 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 SORCS1Q8WY21 1168 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 UPRTQ96BW1 309 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 OTUB1Q96FW1 271 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 SCLYQ96I15 445 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 LRR1Q96L50 414 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 ZNF582Q96NG8 517 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 IL17FQ96PD4 163 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 SOSTQ9BQB4 213 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 FAM83CQ9BQN1 747 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 GON7Q9BXV9 100 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 ZNF717Q9BY31 904 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 IRF2BPLQ9H1B7 796 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 CTPS2Q9NRF8 586 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 SIRT3Q9NTG7 399 aaPredicted RBP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 MAN2C1Q9NTJ4 1040 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 ZSCAN32Q9NX65 697 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 RNF186Q9NXI6 227 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 COMMD3Q9UBI1 195 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 DIMT1Q9UNQ2 313 aaKnown RBP5.13□□□□□ -1.59
LIMA1-212ENST00000552491 MGAT4BQ9UQ53 548 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 CCL26Q9Y258 94 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 GPR52Q9Y2T5 361 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 ALG5Q9Y673 324 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 MYO10Q9HD67 2058 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 HEATR5BQ9P2D3 2071 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 CDH23Q9H251 3354 aa5.13□□□□□ -1.59
LIMA1-212ENST00000552491 XIRP2A4UGR9 3374 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 A0A1W2PQ45 241 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-212ENST00000552491 A0A1W2PQY0 241 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 WASHC1A8K0Z3 465 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 HMGN4O00479 90 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 FAAHO00519 579 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 HPGDSO60760 199 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 EPHX1P07099 455 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 CTSLP07711 333 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 PSKH1P11801 424 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 TIMP2P16035 220 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 UQCRC2P22695 453 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 GSTM5P46439 218 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 KCNJ5P48544 419 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 PRLHRP49683 370 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 VEGFBP49765 207 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 AGFG1P52594 562 aaKnown RBP5.12□□□□□ -1.59
LIMA1-212ENST00000552491 P2RX3P56373 397 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 DBPQ10586 325 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-212ENST00000552491 TMEM115Q12893 351 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-212ENST00000552491 NFE2L1Q14494 772 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 GINS1Q14691 196 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 SYPL1Q16563 259 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 CEP78Q5JTW2 689 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 MPP7Q5T2T1 576 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 DDI2Q5TDH0 399 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 CNIH2Q6PI25 160 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 WASH2PQ6VEQ5 465 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 LIN28BQ6ZN17 250 aaKnown RBP eCLIP5.12□□□□□ -1.59
LIMA1-212ENST00000552491 TMCO2Q7Z6W1 182 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-212ENST00000552491 TMEM25Q86YD3 366 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 TMC8Q8IU68 726 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 TCTE3Q8IZS6 198 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 CPXM2Q8N436 756 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 FAM26EQ8N5C1 309 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 SLC43A3Q8NBI5 491 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 OR5D16Q8NGK9 328 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 ZFAND1Q8TCF1 268 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 HCAR2Q8TDS4 363 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 SNAPC3Q92966 411 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 KIAA1143Q96AT1 154 aaPredicted RBP5.12□□□□□ -1.59
LIMA1-212ENST00000552491 MTERF3Q96E29 417 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 NEURL3Q96EH8 262 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 C1GALT1C1Q96EU7 318 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 WDR34Q96EX3 536 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 SGPP1Q9BX95 441 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 EGLN3Q9H6Z9 239 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 SEMA3GQ9NS98 782 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 GIMAP4Q9NUV9 329 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 NLKQ9UBE8 527 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 FBXW2Q9UKT8 454 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 ACAD8Q9UKU7 415 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 ITM2BQ9Y287 266 aa5.12□□□□□ -1.59
LIMA1-212ENST00000552491 INSL5Q9Y5Q6 135 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms