RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 BCAS4Q8TDM0 211 aa19.73■□□□□ 0.75
VPS29-206ENST00000549578 SNRNP27Q8WVK2 155 aaKnown RBP19.73■□□□□ 0.75
VPS29-206ENST00000549578 OR5P2Q8WZ92 322 aa19.73■□□□□ 0.75
VPS29-206ENST00000549578 SPDL1Q96EA4 605 aa19.73■□□□□ 0.75
VPS29-206ENST00000549578 TMEM45AQ9NWC5 275 aa19.73■□□□□ 0.75
VPS29-206ENST00000549578 FAM120CQ9NX05 1096 aaKnown RBP19.73■□□□□ 0.75
VPS29-206ENST00000549578 ZNF223Q9UK11 482 aaPredicted RBP19.73■□□□□ 0.75
VPS29-206ENST00000549578 DSPP15924 2871 aaKnown RBP19.73■□□□□ 0.75
VPS29-206ENST00000549578 PRSS51A0A1B0GVH4 220 aa19.72■□□□□ 0.75
VPS29-206ENST00000549578 DNAJB5O75953 348 aa19.72■□□□□ 0.75
VPS29-206ENST00000549578 CLPSP04118 112 aa19.72■□□□□ 0.75
VPS29-206ENST00000549578 ICAM2P13598 275 aa19.72■□□□□ 0.75
VPS29-206ENST00000549578 CAPN3P20807 821 aa19.72■□□□□ 0.75
VPS29-206ENST00000549578 HBA1P69905 142 aa19.72■□□□□ 0.75
VPS29-206ENST00000549578 FUT7Q11130 342 aa19.72■□□□□ 0.75
VPS29-206ENST00000549578 AIMP2Q13155 320 aaKnown RBP19.72■□□□□ 0.75
VPS29-206ENST00000549578 VPS26BQ4G0F5 336 aa19.72■□□□□ 0.75
VPS29-206ENST00000549578 KBTBD2Q8IY47 623 aa19.72■□□□□ 0.75
VPS29-206ENST00000549578 VPS37AQ8NEZ2 397 aa19.72■□□□□ 0.75
VPS29-206ENST00000549578 ELP4Q96EB1 424 aa19.72■□□□□ 0.75
VPS29-206ENST00000549578 VMP1Q96GC9 406 aa19.72■□□□□ 0.75
VPS29-206ENST00000549578 MAGED4Q96JG8 741 aa19.72■□□□□ 0.75
VPS29-206ENST00000549578 ART5Q96L15 291 aa19.72■□□□□ 0.75
VPS29-206ENST00000549578 MMP25Q9NPA2 562 aa19.72■□□□□ 0.75
VPS29-206ENST00000549578 SLC52A3Q9NQ40 469 aa19.72■□□□□ 0.75
VPS29-206ENST00000549578 SIRT3Q9NTG7 399 aaPredicted RBP19.72■□□□□ 0.75
VPS29-206ENST00000549578 COPS7AQ9UBW8 275 aa19.72■□□□□ 0.75
VPS29-206ENST00000549578 ZNF639Q9UID6 485 aa19.72■□□□□ 0.75
VPS29-206ENST00000549578 ERVK-11Q9UQG0 969 aa19.72■□□□□ 0.75
VPS29-206ENST00000549578 TRBV11-1A0A0K0K1C0 115 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 CCDC154A6NI56 674 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 CPSF4O95639 269 aaKnown RBP19.71■□□□□ 0.75
VPS29-206ENST00000549578 CBX7O95931 251 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 SERPINA7P05543 415 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 ITGAMP11215 1152 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 ITGA3P26006 1051 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 DUSP8Q13202 625 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 ST3GAL2Q16842 350 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 FHL5Q5TD97 284 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 CCDC197Q8NCU1 140 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 OR4A15Q8NGL6 344 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 ELP5Q8TE02 316 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 THOC3Q96J01 351 aaKnown RBP19.71■□□□□ 0.75
VPS29-206ENST00000549578 SEMA4CQ9C0C4 833 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 CXorf36Q9H7Y0 433 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 MRGBPQ9NV56 204 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 BCAP29Q9UHQ4 241 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 SNX8Q9Y5X2 465 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 CAPN7Q9Y6W3 813 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 NUP214P35658 2090 aaPredicted RBP19.71■□□□□ 0.75
VPS29-206ENST00000549578 ASPDHA6ND91 283 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 A6NL46 340 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 PLOD2O00469 737 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 PLOD3O60568 738 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 CLCN2P51788 898 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 SLC37A1P57057 533 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 C19orf48Q6RUI8 117 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 RNF111Q6ZNA4 994 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 OR52R1Q8NGF1 315 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 CCDC115Q96NT0 180 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 INPP5KQ9BT40 448 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 MYLK2Q9H1R3 596 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 OR10A5Q9H207 317 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 DDX18Q9NVP1 670 aaKnown RBP19.71■□□□□ 0.75
VPS29-206ENST00000549578 BTNL2Q9UIR0 455 aa19.71■□□□□ 0.75
VPS29-206ENST00000549578 PKD1L2Q7Z442 2459 aa19.7■□□□□ 0.74
VPS29-206ENST00000549578 USP24Q9UPU5 2620 aa19.7■□□□□ 0.74
VPS29-206ENST00000549578 UPK1AO00322 258 aa19.7■□□□□ 0.74
VPS29-206ENST00000549578 PRKNO60260 465 aaPredicted RBP19.7■□□□□ 0.74
VPS29-206ENST00000549578 NME6O75414 186 aaPredicted RBP19.7■□□□□ 0.74
VPS29-206ENST00000549578 SLITRK5O94991 958 aa19.7■□□□□ 0.74
VPS29-206ENST00000549578 CCL11P51671 97 aa19.7■□□□□ 0.74
VPS29-206ENST00000549578 RAPSNQ13702 412 aa19.7■□□□□ 0.74
VPS29-206ENST00000549578 MAPKAPK3Q16644 382 aa19.7■□□□□ 0.74
VPS29-206ENST00000549578 SLC2A7Q6PXP3 512 aa19.7■□□□□ 0.74
VPS29-206ENST00000549578 SZRD1Q7Z422 152 aa19.7■□□□□ 0.74
VPS29-206ENST00000549578 APLFQ8IW19 511 aaPredicted RBP19.7■□□□□ 0.74
VPS29-206ENST00000549578 C9orf40Q8IXQ3 194 aa19.7■□□□□ 0.74
VPS29-206ENST00000549578 GALNT16Q8N428 558 aa19.7■□□□□ 0.74
VPS29-206ENST00000549578 ZNF615Q8N8J6 731 aa19.7■□□□□ 0.74
VPS29-206ENST00000549578 ANKS4BQ8N8V4 417 aa19.7■□□□□ 0.74
VPS29-206ENST00000549578 PSMA8Q8TAA3 256 aa19.7■□□□□ 0.74
VPS29-206ENST00000549578 BRIX1Q8TDN6 353 aaKnown RBP19.7■□□□□ 0.74
VPS29-206ENST00000549578 APOBEC4Q8WW27 367 aaKnown RBP19.7■□□□□ 0.74
VPS29-206ENST00000549578 CCDC106Q9BWC9 280 aa19.7■□□□□ 0.74
VPS29-206ENST00000549578 TRIM4Q9C037 500 aa19.7■□□□□ 0.74
VPS29-206ENST00000549578 NEUROD4Q9HD90 331 aa19.7■□□□□ 0.74
VPS29-206ENST00000549578 SERHLQ9NQF3 203 aa19.7■□□□□ 0.74
VPS29-206ENST00000549578 TAS2R9Q9NYW1 312 aa19.7■□□□□ 0.74
VPS29-206ENST00000549578 PTGFRNQ9P2B2 879 aa19.7■□□□□ 0.74
VPS29-206ENST00000549578 PCDHGB4Q9UN71 923 aa19.7■□□□□ 0.74
VPS29-206ENST00000549578 DOCK10Q96BY6 2186 aa19.7■□□□□ 0.74
VPS29-206ENST00000549578 A0A087WV62 115 aa19.69■□□□□ 0.74
VPS29-206ENST00000549578 SNRPB2P08579 225 aaKnown RBP19.69■□□□□ 0.74
VPS29-206ENST00000549578 ADSLP30566 484 aaPredicted RBP19.69■□□□□ 0.74
VPS29-206ENST00000549578 SOAT1P35610 550 aa19.69■□□□□ 0.74
VPS29-206ENST00000549578 CDKN2CP42773 168 aa19.69■□□□□ 0.74
VPS29-206ENST00000549578 BORAQ6PGQ7 559 aa19.69■□□□□ 0.74
VPS29-206ENST00000549578 DNAJC14Q6Y2X3 702 aaPredicted RBP19.69■□□□□ 0.74
VPS29-206ENST00000549578 HSDL2Q6YN16 418 aa19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms