RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 C6orf106Q9H6K1 298 aaPredicted RBP14.22□□□□□ -0.13
USP28-214ENST00000545540 SAGE1Q9NXZ1 904 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 GPR55Q9Y2T6 319 aaPredicted RBP14.22□□□□□ -0.13
USP28-214ENST00000545540 KLK4Q9Y5K2 254 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 CACNA1IQ9P0X4 2223 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 ISPDA4D126 451 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 SPTBP11277 2137 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 ADRB3P13945 408 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 PTPN2P17706 415 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 SSR2P43308 183 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 AVPR1BP47901 424 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 GJA8P48165 433 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 DEFA1P59665 94 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 DEFA3P59666 94 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 ZNF77Q15935 545 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 ATAD3CQ5T2N8 411 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 MLIPQ5VWP3 458 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 AMZ2Q86W34 360 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 TM9SF4Q92544 642 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 C19orf43Q9BQ61 176 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 NXF2Q9GZY0 626 aaKnown RBP14.22□□□□□ -0.13
USP28-214ENST00000545540 GLIPR2Q9H4G4 154 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 TBC1D17Q9HA65 648 aa14.22□□□□□ -0.13
USP28-214ENST00000545540 NUFIP1Q9UHK0 495 aaKnown RBP14.22□□□□□ -0.13
USP28-214ENST00000545540 C4orf51C9J302 202 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 TMCC2O75069 709 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 PAK4O96013 591 aaPredicted RBP14.21□□□□□ -0.13
USP28-214ENST00000545540 CD83Q01151 205 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 EIF4HQ15056 248 aaKnown RBP14.21□□□□□ -0.13
USP28-214ENST00000545540 CRTC2Q53ET0 693 aaPredicted RBP14.21□□□□□ -0.13
USP28-214ENST00000545540 NDUFAF5Q5TEU4 345 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 C18orf63Q68DL7 685 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 TMEM107Q6UX40 140 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 LINC01555Q8NAE3 123 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 SMAP2Q8WU79 429 aaPredicted RBP14.21□□□□□ -0.13
USP28-214ENST00000545540 APOBEC4Q8WW27 367 aaKnown RBP14.21□□□□□ -0.13
USP28-214ENST00000545540 KAT2AQ92830 837 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 RAD51AP1Q96B01 352 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 TRIM43Q96BQ3 446 aaPredicted RBP14.21□□□□□ -0.13
USP28-214ENST00000545540 TMED9Q9BVK6 235 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.21□□□□□ -0.13
USP28-214ENST00000545540 A4GNTQ9UNA3 340 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 FAM183AA6NL82 134 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 CAPN5O15484 640 aaPredicted RBP14.21□□□□□ -0.13
USP28-214ENST00000545540 EPPINO95925 133 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 PTTG1O95997 202 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 SCG5P05408 212 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 ADH5P11766 374 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 FUT1P19526 365 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 CSTF2P33240 577 aaKnown RBP eCLIP14.21□□□□□ -0.13
USP28-214ENST00000545540 LIMK1P53667 647 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 KIAA1161Q6NSJ0 714 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 ZNF793Q6ZN11 406 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 CCDC80Q76M96 950 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 UBE3DQ7Z6J8 389 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 OR4F15Q8NGB8 312 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 FERD3LQ96RJ6 166 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 TBX5Q99593 518 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 TAPBPLQ9BX59 468 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 OR52A5Q9H2C5 316 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 SYNPO2LQ9H987 977 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 SLC25A19Q9HC21 320 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 CCDC59Q9P031 241 aaKnown RBP14.21□□□□□ -0.13
USP28-214ENST00000545540 TBX21Q9UL17 535 aa14.21□□□□□ -0.13
USP28-214ENST00000545540 MRPS23Q9Y3D9 190 aaKnown RBP14.21□□□□□ -0.13
USP28-214ENST00000545540 C2orf92A0A1B0GVN3 265 aa14.21□□□□□ -0.14
USP28-214ENST00000545540 ZC3H12DA2A288 527 aaKnown RBP14.21□□□□□ -0.14
USP28-214ENST00000545540 GSAPA4D1B5 854 aa14.21□□□□□ -0.14
USP28-214ENST00000545540 SLITRK5O94991 958 aa14.21□□□□□ -0.14
USP28-214ENST00000545540 PAPLNO95428 1278 aa14.21□□□□□ -0.14
USP28-214ENST00000545540 RUNX1T1Q06455 604 aa14.21□□□□□ -0.14
USP28-214ENST00000545540 ZNF658BQ4V348 819 aaPredicted RBP14.21□□□□□ -0.14
USP28-214ENST00000545540 SYT14P1Q58G82 188 aa14.21□□□□□ -0.14
USP28-214ENST00000545540 C9orf64Q5T6V5 341 aa14.21□□□□□ -0.14
USP28-214ENST00000545540 SLC30A6Q6NXT4 461 aa14.21□□□□□ -0.14
USP28-214ENST00000545540 VRK2Q86Y07 508 aa14.21□□□□□ -0.14
USP28-214ENST00000545540 KRT78Q8N1N4 520 aa14.21□□□□□ -0.14
USP28-214ENST00000545540 OR52I1Q8NGK6 324 aa14.21□□□□□ -0.14
USP28-214ENST00000545540 POF1BQ8WVV4 589 aa14.21□□□□□ -0.14
USP28-214ENST00000545540 NEURL3Q96EH8 262 aa14.21□□□□□ -0.14
USP28-214ENST00000545540 AICDAQ9GZX7 198 aa14.21□□□□□ -0.14
USP28-214ENST00000545540 MBNL1Q9NR56 388 aaKnown RBP14.21□□□□□ -0.14
USP28-214ENST00000545540 V9GYH0 126 aa14.21□□□□□ -0.14
USP28-214ENST00000545540 QSOX1O00391 747 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 IDH3BO43837 385 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 SLC2A10O95528 541 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 HMGN2P05204 90 aaKnown RBP14.2□□□□□ -0.14
USP28-214ENST00000545540 CHRM4P08173 479 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 IL7P13232 177 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 CAMK1Q14012 370 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 ARHGAP15Q53QZ3 475 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 AGAP6Q5VW22 663 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 SAXO2Q658L1 398 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 TP53I13Q8NBR0 393 aaPredicted RBP14.2□□□□□ -0.14
USP28-214ENST00000545540 TP53INP1Q96A56 240 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 FAM46AQ96IP4 442 aaKnown RBP14.2□□□□□ -0.14
USP28-214ENST00000545540 AGAP4Q96P64 663 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 CERS4Q9HA82 394 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 DYRK4Q9NR20 520 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 TXNL4BQ9NX01 149 aaKnown RBP14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms