RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 XKP51811 444 aa12.06□□□□□ -0.48
RTN3-213ENST00000543552 NR0B1P51843 470 aaKnown RBP12.06□□□□□ -0.48
RTN3-213ENST00000543552 FUT7Q11130 342 aa12.06□□□□□ -0.48
RTN3-213ENST00000543552 MYBPHQ13203 477 aa12.06□□□□□ -0.48
RTN3-213ENST00000543552 RIPPLY2Q5TAB7 128 aa12.06□□□□□ -0.48
RTN3-213ENST00000543552 CES4AQ5XG92 561 aa12.06□□□□□ -0.48
RTN3-213ENST00000543552 ADGRD1Q6QNK2 874 aa12.06□□□□□ -0.48
RTN3-213ENST00000543552 COMMD6Q7Z4G1 85 aa12.06□□□□□ -0.48
RTN3-213ENST00000543552 PACS2Q86VP3 889 aa12.06□□□□□ -0.48
RTN3-213ENST00000543552 LCA5Q86VQ0 697 aa12.06□□□□□ -0.48
RTN3-213ENST00000543552 VWA5B2Q8N398 1253 aa12.06□□□□□ -0.48
RTN3-213ENST00000543552 METTL4Q8N3J2 472 aa12.06□□□□□ -0.48
RTN3-213ENST00000543552 MMGT1Q8N4V1 131 aa12.06□□□□□ -0.48
RTN3-213ENST00000543552 ZNF441Q8N8Z8 693 aa12.06□□□□□ -0.48
RTN3-213ENST00000543552 FAIM2Q9BWQ8 316 aa12.06□□□□□ -0.48
RTN3-213ENST00000543552 MRPL1Q9BYD6 325 aaKnown RBP12.06□□□□□ -0.48
RTN3-213ENST00000543552 OR10A5Q9H207 317 aa12.06□□□□□ -0.48
RTN3-213ENST00000543552 TEX10Q9NXF1 929 aaPredicted RBP12.06□□□□□ -0.48
RTN3-213ENST00000543552 ALKBH4Q9NXW9 302 aa12.06□□□□□ -0.48
RTN3-213ENST00000543552 ITGB1BP2Q9UKP3 347 aa12.06□□□□□ -0.48
RTN3-213ENST00000543552 SLC12A4Q9UP95 1085 aa12.06□□□□□ -0.48
RTN3-213ENST00000543552 NPFFR2Q9Y5X5 522 aa12.06□□□□□ -0.48
RTN3-213ENST00000543552 INTS1Q8N201 2190 aaKnown RBP12.05□□□□□ -0.48
RTN3-213ENST00000543552 F8P00451 2351 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 C15orf38-AP3S2A0A0A6YYH1 394 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 EXOC1LA0A1B0GW35 172 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 HSPB2A8KAH6 182 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 TRIM49D1C9J1S8 452 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 POC1B-GALNT4F8VUJ3 575 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 TRIM3O75382 744 aaPredicted RBP12.05□□□□□ -0.48
RTN3-213ENST00000543552 CLPSP04118 112 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 RPS17P08708 135 aaKnown RBP12.05□□□□□ -0.48
RTN3-213ENST00000543552 SNRPAP09012 282 aaKnown RBP12.05□□□□□ -0.48
RTN3-213ENST00000543552 RFPL3SP0C7P2 107 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 CTAGE8P0CG41 777 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 TAC1P20366 129 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 GCKP35557 465 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 HSPB2Q16082 182 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 SGO1Q5FBB7 561 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 SLC48A1Q6P1K1 146 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 TMEM200AQ86VY9 491 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 CTAGE4Q8IX94 777 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 PM20D2Q8IYS1 436 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 ULK2Q8IYT8 1036 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 OR4F6Q8NGB9 312 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 DOK4Q8TEW6 326 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 ZNF483Q8TF39 744 aaPredicted RBP12.05□□□□□ -0.48
RTN3-213ENST00000543552 SELENOMQ8WWX9 145 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 MTBPQ96DY7 904 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 DTNBP1Q96EV8 351 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 RILPQ96NA2 401 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 ZBTB26Q9HCK0 441 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 ZNF358Q9NW07 568 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 SPRR3Q9UBC9 169 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 TNFRSF10DQ9UBN6 386 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 TRPS1Q9UHF7 1281 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 STK38LQ9Y2H1 464 aa12.05□□□□□ -0.48
RTN3-213ENST00000543552 HCFC1P51610 2035 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 A0A0G2JNJ9 132 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 WASHC1A8K0Z3 465 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 AHRRA9YTQ3 701 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 TRAPPC6AO75865 159 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 ZWINTO95229 277 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 KRT6AP02538 564 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 KRT6BP04259 564 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 ATP1B1P05026 303 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 HSD3B1P14060 373 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 NAGAP17050 411 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 CSNK2A2P19784 350 aaPredicted RBP12.04□□□□□ -0.48
RTN3-213ENST00000543552 ENDOUP21128 410 aaKnown RBP12.04□□□□□ -0.48
RTN3-213ENST00000543552 HSD3B2P26439 372 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 KRT6CP48668 564 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 FBXW4P57775 412 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 TRA2BP62995 288 aaKnown RBP12.04□□□□□ -0.48
RTN3-213ENST00000543552 RTL6Q6ICC9 239 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 WDR53Q7Z5U6 358 aaPredicted RBP12.04□□□□□ -0.48
RTN3-213ENST00000543552 SAMD14Q8IZD0 417 aaPredicted RBP12.04□□□□□ -0.48
RTN3-213ENST00000543552 ZNF615Q8N8J6 731 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 SPPL2AQ8TCT8 520 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 DCAKDQ8WVC6 231 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 ZNF592Q92610 1267 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 KLHL29Q96CT2 875 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 HSPBAP1Q96EW2 488 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 NSUN5Q96P11 429 aaKnown RBP12.04□□□□□ -0.48
RTN3-213ENST00000543552 C1QTNF3Q9BXJ4 246 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 ANGPTL4Q9BY76 406 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 SLC6A15Q9H2J7 730 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 PROK2Q9HC23 129 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 Q9UFV3 132 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 NFU1Q9UMS0 254 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 C15orf41Q9Y2V0 281 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 PCDHA9Q9Y5H5 950 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 ZNF780BQ9Y6R6 833 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 EML6Q6ZMW3 1958 aa12.04□□□□□ -0.48
RTN3-213ENST00000543552 CCDC151A5D8V7 595 aa12.03□□□□□ -0.48
RTN3-213ENST00000543552 A8MT66 165 aa12.03□□□□□ -0.48
RTN3-213ENST00000543552 DVL2O14641 736 aa12.03□□□□□ -0.48
RTN3-213ENST00000543552 ACOX3O15254 700 aa12.03□□□□□ -0.48
RTN3-213ENST00000543552 ERAL1O75616 437 aaKnown RBP12.03□□□□□ -0.48
RTN3-213ENST00000543552 LRATO95237 230 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms