RNA–Protein interactions for RNA: ENST00000540022.5

TNFRSF1A-213, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 1 (best) BASIC

Gene TNFRSF1A, Length 1,527 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-213ENST00000540022 CGREF1Q99674 301 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 PELOQ9BRX2 385 aaKnown RBP17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 GPR87Q9BY21 358 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 ANKRA2Q9H9E1 313 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 CXorf21Q9HAI6 301 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 LHX6Q9UPM6 363 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 SNX8Q9Y5X2 465 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 CACNA1GO43497 2377 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 NPPAP01160 153 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 KRT16P08779 473 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 SOAT1P35610 550 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 CPOXP36551 454 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 MC3RP41968 323 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 MXRA7P84157 204 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 SRSF6Q13247 344 aaKnown RBP17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 TRMT12Q53H54 448 aaKnown RBP17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 C8orf82Q6P1X6 216 aaPredicted RBP17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 GALNT12Q8IXK2 581 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 SIMC1Q8NDZ2 872 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 C7orf57Q8NEG2 295 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 OR7G2Q8NG99 324 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 OR5AK3PQ8NH89 298 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 ZNF675Q8TD23 568 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 PTPMT1Q8WUK0 201 aaPredicted RBP17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 RIT1Q92963 219 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 ROPN1LQ96C74 230 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 CTHRC1Q96CG8 243 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 MAGED4Q96JG8 741 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 TRIM8Q9BZR9 551 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 ADAP2Q9NPF8 381 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 SEMA3GQ9NS98 782 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 GID8Q9NWU2 228 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 TAS2R1Q9NYW7 299 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 VPS4AQ9UN37 437 aa17.67■□□□□ 0.42
TNFRSF1A-213ENST00000540022 IGHV3-20A0A0C4DH32 117 aa17.66■□□□□ 0.42
TNFRSF1A-213ENST00000540022 PLOD2O00469 737 aa17.66■□□□□ 0.42
TNFRSF1A-213ENST00000540022 TNNI3P19429 210 aa17.66■□□□□ 0.42
TNFRSF1A-213ENST00000540022 ITPKBP27987 946 aa17.66■□□□□ 0.42
TNFRSF1A-213ENST00000540022 GALNSP34059 522 aa17.66■□□□□ 0.42
TNFRSF1A-213ENST00000540022 OR4D2P58180 307 aa17.66■□□□□ 0.42
TNFRSF1A-213ENST00000540022 MAP4K2Q12851 820 aa17.66■□□□□ 0.42
TNFRSF1A-213ENST00000540022 ELAVL1Q15717 326 aaKnown RBP17.66■□□□□ 0.42
TNFRSF1A-213ENST00000540022 SFT2D3Q587I9 215 aa17.66■□□□□ 0.42
TNFRSF1A-213ENST00000540022 C8orf44Q96CB5 159 aa17.66■□□□□ 0.42
TNFRSF1A-213ENST00000540022 FAM120BQ96EK7 910 aaKnown RBP17.66■□□□□ 0.42
TNFRSF1A-213ENST00000540022 GPATCH1Q9BRR8 931 aaKnown RBP17.66■□□□□ 0.42
TNFRSF1A-213ENST00000540022 FAM117AQ9C073 453 aa17.66■□□□□ 0.42
TNFRSF1A-213ENST00000540022 IL17BQ9UHF5 180 aa17.66■□□□□ 0.42
TNFRSF1A-213ENST00000540022 PCDHGA6Q9Y5G7 932 aa17.66■□□□□ 0.42
TNFRSF1A-213ENST00000540022 MRPS18BQ9Y676 258 aaKnown RBP17.66■□□□□ 0.42
TNFRSF1A-213ENST00000540022 MGAQ8IWI9 3026 aa17.65■□□□□ 0.42
TNFRSF1A-213ENST00000540022 SYNDIG1LA6NDD5 238 aa17.65■□□□□ 0.42
TNFRSF1A-213ENST00000540022 C17orf105B2RV13 164 aa17.65■□□□□ 0.42
TNFRSF1A-213ENST00000540022 HRKO00198 91 aa17.65■□□□□ 0.42
TNFRSF1A-213ENST00000540022 ATP5HO75947 161 aa17.65■□□□□ 0.42
TNFRSF1A-213ENST00000540022 S1PR1P21453 382 aa17.65■□□□□ 0.42
TNFRSF1A-213ENST00000540022 UQCRC2P22695 453 aa17.65■□□□□ 0.42
TNFRSF1A-213ENST00000540022 CCT3P49368 545 aaKnown RBP17.65■□□□□ 0.42
TNFRSF1A-213ENST00000540022 NCALDP61601 193 aa17.65■□□□□ 0.42
TNFRSF1A-213ENST00000540022 ZNF267Q14586 743 aaPredicted RBP17.65■□□□□ 0.42
TNFRSF1A-213ENST00000540022 LACTB2Q53H82 288 aaPredicted RBP17.65■□□□□ 0.42
TNFRSF1A-213ENST00000540022 RUNDC3AQ59EK9 446 aa17.65■□□□□ 0.42
TNFRSF1A-213ENST00000540022 FHL5Q5TD97 284 aa17.65■□□□□ 0.42
TNFRSF1A-213ENST00000540022 TMEM64Q6YI46 380 aa17.65■□□□□ 0.42
TNFRSF1A-213ENST00000540022 TRIML2Q8N7C3 387 aa17.65■□□□□ 0.42
TNFRSF1A-213ENST00000540022 CRELD1Q96HD1 420 aa17.65■□□□□ 0.42
TNFRSF1A-213ENST00000540022 ANKRD27Q96NW4 1050 aa17.65■□□□□ 0.42
TNFRSF1A-213ENST00000540022 SLC35A5Q9BS91 424 aa17.65■□□□□ 0.42
TNFRSF1A-213ENST00000540022 NIPSNAP3AQ9UFN0 247 aaPredicted RBP17.65■□□□□ 0.42
TNFRSF1A-213ENST00000540022 ZNF639Q9UID6 485 aa17.65■□□□□ 0.42
TNFRSF1A-213ENST00000540022 KCND3Q9UK17 655 aa17.65■□□□□ 0.42
TNFRSF1A-213ENST00000540022 HS3ST3B1Q9Y662 390 aa17.65■□□□□ 0.42
TNFRSF1A-213ENST00000540022 NUP210LQ5VU65 1888 aa17.65■□□□□ 0.42
TNFRSF1A-213ENST00000540022 LOC102723996A0A087X1L8 192 aa17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 RNF103-CHMP3A0A140T963 221 aa17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 ERICH4A6NGS2 130 aa17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 UPK1AO00322 258 aa17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 PLOD3O60568 738 aa17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 HNRNPCL1O60812 293 aaKnown RBP17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 SLITRK5O94991 958 aa17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 SLC6A2P23975 617 aa17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 MMP11P24347 488 aa17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 PGDP52209 483 aa17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 CLN3Q13286 438 aa17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 SPDYE7PQ495Y7 208 aa17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 NANOGP8Q6NSW7 305 aa17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 CPEB2Q7Z5Q1 589 aaKnown RBP17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 YTHDF3Q7Z739 585 aaKnown RBP17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 OR2L13Q8N349 312 aa17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 VWA5B2Q8N398 1253 aa17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 AMER2Q8N7J2 671 aa17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 ZFP90Q8TF47 636 aa17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 WDR77Q9BQA1 342 aaPredicted RBP17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 CNPPD1Q9BV87 410 aa17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 C1orf21Q9H246 121 aa17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 IKZF5Q9H5V7 419 aa17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 EPS8L2Q9H6S3 715 aa17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 NANOGQ9H9S0 305 aa17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 GPN2Q9H9Y4 310 aaPredicted RBP17.64■□□□□ 0.41
TNFRSF1A-213ENST00000540022 TPT1P8Q9HAU6 139 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 648.7 ms