RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 MSS51Q4VC12 460 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 RNASEH2BQ5TBB1 312 aaKnown RBP10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 HLA-DQA1Q5Y7H0 255 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 C18orf63Q68DL7 685 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 HEPHL1Q6MZM0 1159 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 PODNL1Q6PEZ8 512 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 CCDC137Q6PK04 289 aaKnown RBP10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 ENPP6Q6UWR7 440 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 PLXDC2Q6UX71 529 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 PLEKHM3Q6ZWE6 761 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 IGDCC3Q8IVU1 814 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 GCNT2Q8N0V5 402 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 SNX31Q8N9S9 440 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 UCN3Q969E3 161 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 ESAMQ96AP7 390 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 TMEM79Q9BSE2 394 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 PLAC1Q9HBJ0 212 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 PHF11Q9UIL8 331 aa10.57□□□□□ -0.72
CLSTN3-209ENST00000539982 SONP18583 2426 aaKnown RBP10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 WASHC1A8K0Z3 465 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 SAP18O00422 153 aaKnown RBP10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 SH3BGRLO75368 114 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 IFNA2P01563 188 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 CD79BP40259 229 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 HSPA7P48741 367 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 TAS2R39P59534 338 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 TNFRSF17Q02223 184 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 IRF8Q02556 426 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 KRTAP1-1Q07627 177 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 CHIT1Q13231 466 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 E2F2Q14209 437 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 CAPRIN1Q14444 709 aaKnown RBP10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 ZNF460Q14592 562 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 PDK4Q16654 411 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 CDKL4Q5MAI5 379 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 DEPDC1Q5TB30 811 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 KHDRBS2Q5VWX1 349 aaKnown RBP10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 SULT1C3Q6IMI6 304 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 TRMT10BQ6PF06 316 aaKnown RBP10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 ANGPTL8Q6UXH0 198 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 ZNF662Q6ZS27 426 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 MED12LQ86YW9 2145 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 TRIM42Q8IWZ5 723 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 MEIOBQ8N635 442 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 IGFBPL1Q8WX77 278 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 TMEM158Q8WZ71 300 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 UBE2E3Q969T4 207 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 ADIPOR1Q96A54 375 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 CMTM7Q96FZ5 175 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 MARK4Q96L34 752 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 MED18Q9BUE0 208 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 G6PC3Q9BUM1 346 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 SORBS1Q9BX66 1292 aaKnown RBP10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 PRM3Q9NNZ6 103 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 CLCF1Q9UBD9 225 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 MED12Q93074 2177 aa10.56□□□□□ -0.72
CLSTN3-209ENST00000539982 FAM95CA0A1B0GW59 222 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 A0A1W2PNV4 684 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 PRKRAO75569 313 aaKnown RBP10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 CBR3O75828 277 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 SMNDC1O75940 238 aaKnown RBP eCLIP10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 CRHP06850 196 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 ABCB1P08183 1280 aaPredicted RBP10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 SLC35E2BP0CK96 405 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 SLC35E2P0CK97 266 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 NAGAP17050 411 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 EPORP19235 508 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 SERPINB1P30740 379 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 SSTR4P31391 388 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 UGT2B10P36537 528 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 BUD31P41223 144 aaPredicted RBP10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 HNRNPH2P55795 449 aaKnown RBP10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 FUT7Q11130 342 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 TNK1Q13470 666 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 CYP1B1Q16678 543 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 FBXO48Q5FWF7 155 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 SLC30A6Q6NXT4 461 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 MED27Q6P2C8 311 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 TMEM81Q6P7N7 255 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 ZC3HC1Q86WB0 502 aaKnown RBP10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 LAS2Q8IYD9 372 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 ZCCHC7Q8N3Z6 543 aaKnown RBP10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 ZNF615Q8N8J6 731 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 OR14L1PQ8NHC6 308 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 RGMAQ96B86 450 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 CTHRC1Q96CG8 243 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 STARD4Q96DR4 205 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 FAM111AQ96PZ2 611 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 HS3ST6Q96QI5 342 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 SLC39A3Q9BRY0 314 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 OR51B5Q9H339 312 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 METTL7AQ9H8H3 244 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 POPDC3Q9HBV1 291 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 ZNF701Q9NV72 531 aaPredicted RBP10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 ELOVL5Q9NYP7 299 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 EXO1Q9UQ84 846 aaKnown RBP10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 PSAT1Q9Y617 370 aa10.55□□□□□ -0.72
CLSTN3-209ENST00000539982 RAI1Q7Z5J4 1906 aaPredicted RBP10.54□□□□□ -0.72
CLSTN3-209ENST00000539982 C16orf97H3BN30 126 aa10.54□□□□□ -0.72
CLSTN3-209ENST00000539982 PLOD2O00469 737 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms