RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 SNTB1Q13884 538 aaKnown RBP10.4□□□□□ -0.74
VPS28-214ENST00000531032 UAP1Q16222 522 aaPredicted RBP10.4□□□□□ -0.74
VPS28-214ENST00000531032 KRTAP21-3Q3LHN1 58 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 TECRLQ5HYJ1 363 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 NHSL2Q5HYW2 709 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 FNDC7Q5VTL7 733 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 BICRALQ6AI39 1079 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 KLC3Q6P597 504 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 POMZP3Q6PJE2 187 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 TMEM64Q6YI46 380 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 LACC1Q8IV20 430 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 ZNF615Q8N8J6 731 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 C17orf47Q8NEP4 570 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 ADIPOR1Q96A54 375 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 NTNG2Q96CW9 530 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 TRIM44Q96DX7 344 aaPredicted RBP10.4□□□□□ -0.74
VPS28-214ENST00000531032 RILPQ96NA2 401 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 SERPINI1Q99574 410 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 TIMP4Q99727 224 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 GPATCH1Q9BRR8 931 aaKnown RBP10.4□□□□□ -0.74
VPS28-214ENST00000531032 ANGPTL4Q9BY76 406 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 POLDIP3Q9BY77 421 aaKnown RBP10.4□□□□□ -0.74
VPS28-214ENST00000531032 PRDM14Q9GZV8 571 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 RASSF1Q9NS23 344 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 TEX10Q9NXF1 929 aaPredicted RBP10.4□□□□□ -0.74
VPS28-214ENST00000531032 CRIM1Q9NZV1 1036 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 CPSF2Q9P2I0 782 aaKnown RBP10.4□□□□□ -0.74
VPS28-214ENST00000531032 ADAM29Q9UKF5 820 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 NPFFR2Q9Y5X5 522 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 AKAP6Q13023 2319 aa10.4□□□□□ -0.74
VPS28-214ENST00000531032 ZNF469Q96JG9 3925 aaPredicted RBP10.39□□□□□ -0.75
VPS28-214ENST00000531032 PRRC2AP48634 2157 aaKnown RBP10.39□□□□□ -0.75
VPS28-214ENST00000531032 KDM4EB2RXH2 506 aaPredicted RBP10.39□□□□□ -0.75
VPS28-214ENST00000531032 KIF2AO00139 706 aaPredicted RBP10.39□□□□□ -0.75
VPS28-214ENST00000531032 DVL2O14641 736 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 CT62P0C5K7 136 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 CTAGE8P0CG41 777 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 BMP5P22003 454 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 PIK3R1P27986 724 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 UQCRC1P31930 480 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 CASP3P42574 277 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 SERPINB8P50452 374 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 CDK9P50750 372 aaKnown RBP10.39□□□□□ -0.75
VPS28-214ENST00000531032 NRG3P56975 720 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 FLYWCH1Q4VC44 716 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 C10orf62Q5T681 223 aaPredicted RBP10.39□□□□□ -0.75
VPS28-214ENST00000531032 HLA-DQA1Q5Y7H0 255 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 FRG2Q64ET8 278 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 VASNQ6EMK4 673 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 PACS2Q86VP3 889 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 CTAGE4Q8IX94 777 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 PM20D2Q8IYS1 436 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 PTGR2Q8N8N7 351 aaPredicted RBP10.39□□□□□ -0.75
VPS28-214ENST00000531032 TNIP2Q8NFZ5 429 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 OR7G1Q8NGA0 311 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 OR4K14Q8NGD5 310 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 OR52B6Q8NGF0 335 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 RNASE6Q93091 150 aaKnown RBP10.39□□□□□ -0.75
VPS28-214ENST00000531032 MRRFQ96E11 262 aaKnown RBP10.39□□□□□ -0.75
VPS28-214ENST00000531032 TMEM41AQ96HV5 264 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 CDK15Q96Q40 435 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 FRG2BQ96QU4 278 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 LRRC1Q9BTT6 524 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 NTMT1Q9BV86 223 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 TMUB1Q9BVT8 246 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 OR10A5Q9H207 317 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 CLEC4MQ9H2X3 399 aaPredicted RBP10.39□□□□□ -0.75
VPS28-214ENST00000531032 NOL11Q9H8H0 719 aaKnown RBP10.39□□□□□ -0.75
VPS28-214ENST00000531032 CCM2LQ9NUG4 571 aaPredicted RBP10.39□□□□□ -0.75
VPS28-214ENST00000531032 ZNF629Q9UEG4 869 aaPredicted RBP10.39□□□□□ -0.75
VPS28-214ENST00000531032 ST6GALNAC2Q9UJ37 374 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 FOXD3Q9UJU5 478 aaPredicted RBP10.39□□□□□ -0.75
VPS28-214ENST00000531032 C15orf41Q9Y2V0 281 aa10.39□□□□□ -0.75
VPS28-214ENST00000531032 KIAA1549Q9HCM3 1950 aa10.38□□□□□ -0.75
VPS28-214ENST00000531032 A6NNC1 897 aa10.38□□□□□ -0.75
VPS28-214ENST00000531032 STX16-NPEPL1H3BU86 382 aa10.38□□□□□ -0.75
VPS28-214ENST00000531032 STX16O14662 325 aa10.38□□□□□ -0.75
VPS28-214ENST00000531032 CDH16O75309 829 aa10.38□□□□□ -0.75
VPS28-214ENST00000531032 TRAPPC6AO75865 159 aa10.38□□□□□ -0.75
VPS28-214ENST00000531032 IL2RAP01589 272 aa10.38□□□□□ -0.75
VPS28-214ENST00000531032 KLK1P06870 262 aa10.38□□□□□ -0.75
VPS28-214ENST00000531032 CPMP14384 443 aa10.38□□□□□ -0.75
VPS28-214ENST00000531032 S1PR1P21453 382 aa10.38□□□□□ -0.75
VPS28-214ENST00000531032 GPX3P22352 226 aa10.38□□□□□ -0.75
VPS28-214ENST00000531032 ABCD3P28288 659 aa10.38□□□□□ -0.75
VPS28-214ENST00000531032 TYK2P29597 1187 aa10.38□□□□□ -0.75
VPS28-214ENST00000531032 MASP1P48740 699 aa10.38□□□□□ -0.75
VPS28-214ENST00000531032 ZNF136P52737 540 aa10.38□□□□□ -0.75
VPS28-214ENST00000531032 WNT3P56703 355 aa10.38□□□□□ -0.75
VPS28-214ENST00000531032 RPP38P78345 283 aaKnown RBP10.38□□□□□ -0.75
VPS28-214ENST00000531032 TRAF3Q13114 568 aa10.38□□□□□ -0.75
VPS28-214ENST00000531032 SF3B4Q15427 424 aaKnown RBP eCLIP10.38□□□□□ -0.756e-8■■■■■ 27
VPS28-214ENST00000531032 NSUN5P2Q63ZY6 315 aa10.38□□□□□ -0.75
VPS28-214ENST00000531032 TMEM81Q6P7N7 255 aa10.38□□□□□ -0.75
VPS28-214ENST00000531032 PLD6Q8N2A8 252 aaKnown RBP10.38□□□□□ -0.75
VPS28-214ENST00000531032 CHDHQ8NE62 594 aaPredicted RBP10.38□□□□□ -0.75
VPS28-214ENST00000531032 FAM222BQ8WU58 562 aa10.38□□□□□ -0.75
VPS28-214ENST00000531032 ISL2Q96A47 359 aa10.38□□□□□ -0.75
VPS28-214ENST00000531032 HSPBAP1Q96EW2 488 aa10.38□□□□□ -0.75
VPS28-214ENST00000531032 LRRC46Q96FV0 321 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms