RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 SF3A2Q15428 464 aaKnown RBP12.53□□□□□ -0.4
TCOF1-213ENST00000514442 EIPR1Q53HC9 387 aa12.53□□□□□ -0.4
TCOF1-213ENST00000514442 PTRH1Q86Y79 214 aaKnown RBP12.53□□□□□ -0.4
TCOF1-213ENST00000514442 PDZD9Q8IXQ8 264 aa12.53□□□□□ -0.4
TCOF1-213ENST00000514442 KLHDC9Q8NEP7 349 aa12.53□□□□□ -0.4
TCOF1-213ENST00000514442 RAB7BQ96AH8 199 aa12.53□□□□□ -0.4
TCOF1-213ENST00000514442 SHDQ96IW2 340 aa12.53□□□□□ -0.4
TCOF1-213ENST00000514442 NELL2Q99435 816 aa12.53□□□□□ -0.4
TCOF1-213ENST00000514442 FUZQ9BT04 418 aa12.53□□□□□ -0.4
TCOF1-213ENST00000514442 ABCG5Q9H222 651 aa12.53□□□□□ -0.4
TCOF1-213ENST00000514442 IL26Q9NPH9 171 aa12.53□□□□□ -0.4
TCOF1-213ENST00000514442 TAS2R3Q9NYW6 316 aa12.53□□□□□ -0.4
TCOF1-213ENST00000514442 LAMB1P07942 1786 aa12.53□□□□□ -0.4
TCOF1-213ENST00000514442 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.53□□□□□ -0.4
TCOF1-213ENST00000514442 A0A1B0GVI7 797 aa12.53□□□□□ -0.4
TCOF1-213ENST00000514442 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.53□□□□□ -0.4
TCOF1-213ENST00000514442 GMDSO60547 372 aa12.53□□□□□ -0.4
TCOF1-213ENST00000514442 SLC22A5O76082 557 aa12.53□□□□□ -0.4
TCOF1-213ENST00000514442 BCKDHAP12694 445 aa12.53□□□□□ -0.4
TCOF1-213ENST00000514442 OR1E2P47887 323 aa12.53□□□□□ -0.4
TCOF1-213ENST00000514442 HTR6P50406 440 aa12.53□□□□□ -0.4
TCOF1-213ENST00000514442 FAM217AQ8IXS0 508 aa12.53□□□□□ -0.4
TCOF1-213ENST00000514442 OR4C6Q8NH72 309 aa12.53□□□□□ -0.4
TCOF1-213ENST00000514442 RNASE11Q8TAA1 199 aaKnown RBP12.53□□□□□ -0.4
TCOF1-213ENST00000514442 GEMIN6Q8WXD5 167 aaKnown RBP12.53□□□□□ -0.4
TCOF1-213ENST00000514442 KCNN1Q92952 543 aa12.53□□□□□ -0.4
TCOF1-213ENST00000514442 FYTTD1Q96QD9 318 aaKnown RBP12.53□□□□□ -0.4
TCOF1-213ENST00000514442 HPF1Q9NWY4 346 aa12.53□□□□□ -0.4
TCOF1-213ENST00000514442 CA14Q9ULX7 337 aa12.53□□□□□ -0.4
TCOF1-213ENST00000514442 IL3P08700 152 aa12.52□□□□□ -0.4
TCOF1-213ENST00000514442 ADRB3P13945 408 aa12.52□□□□□ -0.4
TCOF1-213ENST00000514442 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.52□□□□□ -0.4
TCOF1-213ENST00000514442 FAM205BPQ63HN1 556 aa12.52□□□□□ -0.4
TCOF1-213ENST00000514442 RPTNQ6XPR3 784 aa12.52□□□□□ -0.4
TCOF1-213ENST00000514442 HMGN2P46Q86SG4 172 aa12.52□□□□□ -0.4
TCOF1-213ENST00000514442 SLC9B2Q86UD5 537 aa12.52□□□□□ -0.4
TCOF1-213ENST00000514442 PIANPQ8IYJ0 282 aa12.52□□□□□ -0.4
TCOF1-213ENST00000514442 ZNF416Q9BWM5 594 aa12.52□□□□□ -0.4
TCOF1-213ENST00000514442 TSSK6Q9BXA6 273 aa12.52□□□□□ -0.4
TCOF1-213ENST00000514442 DRGXA6NNA5 263 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 DISC1C4P0D8 188 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 WWP2O00308 870 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 RTCAO00442 366 aaKnown RBP12.52□□□□□ -0.41
TCOF1-213ENST00000514442 CDC123O75794 336 aaPredicted RBP12.52□□□□□ -0.41
TCOF1-213ENST00000514442 FHP07954 510 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 RORAP35398 523 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 RNF144AP50876 292 aaPredicted RBP12.52□□□□□ -0.41
TCOF1-213ENST00000514442 CLCN7P51798 805 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 NTRK2Q16620 822 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 LIPJQ5W064 366 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 NETO1Q8TDF5 533 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 TSNAXQ99598 290 aaKnown RBP12.52□□□□□ -0.41
TCOF1-213ENST00000514442 PLSCR3Q9NRY6 295 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 PIAS3Q9Y6X2 628 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 SH3D21A4FU49 640 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 GRXCR1A8MXD5 290 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 H2AFB2P0C5Z0 115 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 SMN1Q16637 294 aaKnown RBP12.52□□□□□ -0.41
TCOF1-213ENST00000514442 KIAA1161Q6NSJ0 714 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 DENND6BQ8NEG7 585 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 OLIG1Q8TAK6 271 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 DOK4Q8TEW6 326 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 ZNF436Q9C0F3 470 aaPredicted RBP12.52□□□□□ -0.41
TCOF1-213ENST00000514442 REEP4Q9H6H4 257 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 BEX1Q9HBH7 125 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 OSGIN1Q9UJX0 560 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 ITGBL1O95965 494 aaPredicted RBP12.52□□□□□ -0.41
TCOF1-213ENST00000514442 UBL4AP11441 157 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 IGFBP6P24592 240 aaPredicted RBP12.52□□□□□ -0.41
TCOF1-213ENST00000514442 GRK6P43250 576 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 PAMR1Q6UXH9 720 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 LRRN1Q6UXK5 716 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 FRRS1Q6ZNA5 592 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 SLC30A8Q8IWU4 369 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 SLC25A36Q96CQ1 311 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 WDR92Q96MX6 357 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 F2RL3Q96RI0 385 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 ACTR6Q9GZN1 396 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 DCAF13Q9NV06 445 aaKnown RBP12.52□□□□□ -0.41
TCOF1-213ENST00000514442 MAFFQ9ULX9 164 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 GPR45Q9Y5Y3 372 aa12.52□□□□□ -0.41
TCOF1-213ENST00000514442 TRIM64A6NGJ6 449 aa12.51□□□□□ -0.41
TCOF1-213ENST00000514442 TRIM64BA6NI03 449 aa12.51□□□□□ -0.41
TCOF1-213ENST00000514442 EEF1E1O43324 174 aaKnown RBP12.51□□□□□ -0.41
TCOF1-213ENST00000514442 H1F0P07305 194 aaKnown RBP12.51□□□□□ -0.41
TCOF1-213ENST00000514442 PVALBP20472 110 aaPredicted RBP12.51□□□□□ -0.41
TCOF1-213ENST00000514442 TPMTP51580 245 aa12.51□□□□□ -0.41
TCOF1-213ENST00000514442 MLIPQ5VWP3 458 aa12.51□□□□□ -0.41
TCOF1-213ENST00000514442 TMEM173Q86WV6 379 aaPredicted RBP12.51□□□□□ -0.41
TCOF1-213ENST00000514442 GKN2Q86XP6 184 aa12.51□□□□□ -0.41
TCOF1-213ENST00000514442 RASGRP3Q8IV61 690 aa12.51□□□□□ -0.41
TCOF1-213ENST00000514442 CCDC116Q8IYX3 515 aa12.51□□□□□ -0.41
TCOF1-213ENST00000514442 ACVR1CQ8NER5 493 aa12.51□□□□□ -0.41
TCOF1-213ENST00000514442 RPLP0P6Q8NHW5 317 aa12.51□□□□□ -0.41
TCOF1-213ENST00000514442 SGTBQ96EQ0 304 aa12.51□□□□□ -0.41
TCOF1-213ENST00000514442 TAPBPLQ9BX59 468 aa12.51□□□□□ -0.41
TCOF1-213ENST00000514442 OR2A25A4D2G3 310 aa12.51□□□□□ -0.41
TCOF1-213ENST00000514442 KCNK2O95069 426 aa12.51□□□□□ -0.41
TCOF1-213ENST00000514442 SOX14O95416 240 aa12.51□□□□□ -0.41
TCOF1-213ENST00000514442 C1QBP02746 253 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms