RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 LCN9Q8WX39 176 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 IGFBPL1Q8WX77 278 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 CTNNBL1Q8WYA6 563 aaPredicted RBP3.66□□□□□ -1.82
USP54-217ENST00000498213 NPIPB3Q92617 1050 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 RSC1A1Q92681 617 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 N4BP2L2Q92802 583 aaPredicted RBP3.66□□□□□ -1.82
USP54-217ENST00000498213 HAS2Q92819 552 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 MUL1Q969V5 352 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 ZUFSPQ96AP4 578 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 HAUS1Q96CS2 278 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 DCUN1D1Q96GG9 259 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 REXO5Q96IC2 774 aaKnown RBP3.66□□□□□ -1.82
USP54-217ENST00000498213 MAGED4Q96JG8 741 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 CCDC138Q96M89 665 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 OLFM3Q96PB7 478 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 RNF157Q96PX1 679 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 PEBP4Q96S96 227 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 TBC1D10AQ9BXI6 508 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 LHPPQ9H008 270 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 SRMSQ9H3Y6 488 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 TSPY26PQ9H489 355 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 HAUS4Q9H6D7 363 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 GRPEL1Q9HAV7 217 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 ARNT2Q9HBZ2 717 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 IL26Q9NPH9 171 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 KCNJ16Q9NPI9 418 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 NECTIN3Q9NQS3 549 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 C14orf105Q9NVL8 296 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 SOHLH2Q9NX45 425 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 P4HTMQ9NXG6 502 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 TAB2Q9NYJ8 693 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 COQ3Q9NZJ6 369 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 ABI3Q9P2A4 366 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 CD84Q9UIB8 345 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 ANAPC7Q9UJX3 599 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 CDC14AQ9UNH5 594 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 PLCL2Q9UPR0 1127 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 LAMP3Q9UQV4 416 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 CHKBQ9Y259 395 aa3.66□□□□□ -1.82
USP54-217ENST00000498213 SBDSQ9Y3A5 250 aaKnown RBP eCLIP3.66□□□□□ -1.82
USP54-217ENST00000498213 GTF3C1Q12789 2109 aa3.65□□□□□ -1.82
USP54-217ENST00000498213 IGLV3-16A0A075B6K0 115 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 IGLV3-12A0A075B6K2 115 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 A0A1B0GX78 115 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 C3orf70A6NLC5 250 aaPredicted RBP3.65□□□□□ -1.83
USP54-217ENST00000498213 LRRC53A6NM62 1247 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 A8MX80 341 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 IDSB3KWA1 339 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 H3BMH7 237 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 CLDN4O14493 209 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 EPHB6O15197 1021 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 STX7O15400 261 aaKnown RBP3.65□□□□□ -1.83
USP54-217ENST00000498213 PSMD3O43242 534 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 PSTPIP1O43586 416 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 LDB2O43679 373 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 KIF1CO43896 1103 aaKnown RBP3.65□□□□□ -1.83
USP54-217ENST00000498213 ALOX12BO75342 701 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 OR2B3O76000 313 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 AP2A1O95782 977 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 EML2O95834 649 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 HPP00738 406 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 FTH1P02794 183 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 HLA-DQB2P05538 268 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 CAPN1P07384 714 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 CTPS1P17812 591 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 CD53P19397 219 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 TNFRSF1BP20333 461 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 IL10P22301 178 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 HRH2P25021 359 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 PTPN3P26045 913 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 PRDX3P30048 256 aaKnown RBP3.65□□□□□ -1.83
USP54-217ENST00000498213 GRK5P34947 590 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 HSD17B2P37059 387 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 NSG1P42857 185 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 PGGT1BP53609 377 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 GEMP55040 296 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 MAXP61244 160 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 PMP22Q01453 160 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 CACNG1Q06432 222 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 NIPAL4Q0D2K0 466 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 GALNT3Q14435 633 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 PRPSAP1Q14558 356 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 SLC1A5Q15758 541 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 TAZQ16635 292 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 ATP13A5Q4VNC0 1218 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 RAB6CQ53S08 254 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 ZNF789Q5FWF6 425 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 GPRC6AQ5T6X5 926 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 GARNL3Q5VVW2 1013 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 ALKBH5Q6P6C2 394 aaKnown RBP3.65□□□□□ -1.83
USP54-217ENST00000498213 ZNF474Q6S9Z5 364 aaPredicted RBP3.65□□□□□ -1.83
USP54-217ENST00000498213 SPESP1Q6UW49 350 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 PACS1Q6VY07 963 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 FAM92BQ6ZTR7 304 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 NLRP9Q7RTR0 991 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 ZNF571Q7Z3V5 609 aaPredicted RBP3.65□□□□□ -1.83
USP54-217ENST00000498213 GLT6D1Q7Z4J2 308 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 SNX20Q7Z614 316 aa3.65□□□□□ -1.83
USP54-217ENST00000498213 CCDC71Q8IV32 467 aaPredicted RBP3.65□□□□□ -1.83
USP54-217ENST00000498213 KLHDC8BQ8IXV7 354 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms