RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 SLC37A1P57057 533 aa14.96□□□□□ -0.01
VIM-208ENST00000497849 GAB1Q13480 694 aa14.96□□□□□ -0.01
VIM-208ENST00000497849 MSS51Q4VC12 460 aa14.96□□□□□ -0.01
VIM-208ENST00000497849 HP1BP3Q5SSJ5 553 aaPredicted RBP14.96□□□□□ -0.01
VIM-208ENST00000497849 RNF111Q6ZNA4 994 aa14.96□□□□□ -0.01
VIM-208ENST00000497849 ACOT4Q8N9L9 421 aa14.96□□□□□ -0.01
VIM-208ENST00000497849 BBOF1Q8ND07 529 aa14.96□□□□□ -0.01
VIM-208ENST00000497849 TMEM41AQ96HV5 264 aa14.96□□□□□ -0.01
VIM-208ENST00000497849 ART5Q96L15 291 aa14.96□□□□□ -0.01
VIM-208ENST00000497849 KCNC2Q96PR1 638 aa14.96□□□□□ -0.01
VIM-208ENST00000497849 PITHD1Q9GZP4 211 aaPredicted RBP14.96□□□□□ -0.01
VIM-208ENST00000497849 ACBD3Q9H3P7 528 aa14.96□□□□□ -0.01
VIM-208ENST00000497849 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.96□□□□□ -0.012e-33■■□□□ 11.5
VIM-208ENST00000497849 UTP11Q9Y3A2 253 aaKnown RBP14.96□□□□□ -0.01
VIM-208ENST00000497849 IQANK1A0A1B0GTG1 560 aa14.95□□□□□ -0.02
VIM-208ENST00000497849 A0A1W2PNV4 684 aa14.95□□□□□ -0.02
VIM-208ENST00000497849 H0Y3Z8 333 aa14.95□□□□□ -0.02
VIM-208ENST00000497849 CPN2P22792 545 aa14.95□□□□□ -0.02
VIM-208ENST00000497849 ATP5J2P56134 94 aa14.95□□□□□ -0.02
VIM-208ENST00000497849 SRYQ05066 204 aa14.95□□□□□ -0.02
VIM-208ENST00000497849 TIGD3Q6B0B8 471 aa14.95□□□□□ -0.02
VIM-208ENST00000497849 ZNF474Q6S9Z5 364 aaPredicted RBP14.95□□□□□ -0.02
VIM-208ENST00000497849 ZDHHC24Q6UX98 284 aa14.95□□□□□ -0.02
VIM-208ENST00000497849 ZNF550Q7Z398 422 aa14.95□□□□□ -0.02
VIM-208ENST00000497849 TAGAPQ8N103 731 aa14.95□□□□□ -0.02
VIM-208ENST00000497849 C7orf57Q8NEG2 295 aa14.95□□□□□ -0.02
VIM-208ENST00000497849 TMEM171Q8WVE6 324 aa14.95□□□□□ -0.02
VIM-208ENST00000497849 CTHRC1Q96CG8 243 aa14.95□□□□□ -0.02
VIM-208ENST00000497849 STARD4Q96DR4 205 aa14.95□□□□□ -0.02
VIM-208ENST00000497849 RAB17Q9H0T7 212 aa14.95□□□□□ -0.02
VIM-208ENST00000497849 SLC17A6Q9P2U8 582 aa14.95□□□□□ -0.02
VIM-208ENST00000497849 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.94□□□□□ -0.02
VIM-208ENST00000497849 NPEPPSL1A6NEC2 478 aa14.94□□□□□ -0.02
VIM-208ENST00000497849 TLX2O43763 284 aaPredicted RBP14.94□□□□□ -0.02
VIM-208ENST00000497849 DYRK3O43781 588 aa14.94□□□□□ -0.02
VIM-208ENST00000497849 CD5LO43866 347 aa14.94□□□□□ -0.02
VIM-208ENST00000497849 SCELO95171 688 aa14.94□□□□□ -0.02
VIM-208ENST00000497849 TGM6O95932 706 aa14.94□□□□□ -0.02
VIM-208ENST00000497849 HIST1H1TP22492 207 aaPredicted RBP14.94□□□□□ -0.02
VIM-208ENST00000497849 UGT2B10P36537 528 aa14.94□□□□□ -0.02
VIM-208ENST00000497849 PLTPP55058 493 aa14.94□□□□□ -0.02
VIM-208ENST00000497849 EEF1A1P68104 462 aaKnown RBP14.94□□□□□ -0.02
VIM-208ENST00000497849 CDKL1Q00532 357 aa14.94□□□□□ -0.02
VIM-208ENST00000497849 PLIN5Q00G26 463 aa14.94□□□□□ -0.02
VIM-208ENST00000497849 TGM3Q08188 693 aa14.94□□□□□ -0.02
VIM-208ENST00000497849 ZNF267Q14586 743 aaPredicted RBP14.94□□□□□ -0.02
VIM-208ENST00000497849 MORF4L2Q15014 288 aa14.94□□□□□ -0.02
VIM-208ENST00000497849 SPRED3Q2MJR0 410 aa14.94□□□□□ -0.02
VIM-208ENST00000497849 KRTAP24-1Q3LI83 254 aa14.94□□□□□ -0.02
VIM-208ENST00000497849 EEF1A1P5Q5VTE0 462 aa14.94□□□□□ -0.02
VIM-208ENST00000497849 VWA1Q6PCB0 445 aa14.94□□□□□ -0.02
VIM-208ENST00000497849 IGDCC3Q8IVU1 814 aa14.94□□□□□ -0.02
VIM-208ENST00000497849 CNTN4Q8IWV2 1026 aa14.94□□□□□ -0.02
VIM-208ENST00000497849 IFT81Q8WYA0 676 aa14.94□□□□□ -0.02
VIM-208ENST00000497849 ZC3HAV1LQ96H79 300 aaKnown RBP14.94□□□□□ -0.02
VIM-208ENST00000497849 FAM111AQ96PZ2 611 aa14.94□□□□□ -0.02
VIM-208ENST00000497849 EGFL8Q99944 293 aa14.94□□□□□ -0.02
VIM-208ENST00000497849 TBCDQ9BTW9 1192 aa14.94□□□□□ -0.02
VIM-208ENST00000497849 ROGDIQ9GZN7 287 aa14.94□□□□□ -0.02
VIM-208ENST00000497849 YAE1D1Q9NRH1 226 aa14.94□□□□□ -0.02
VIM-208ENST00000497849 WWOXQ9NZC7 414 aa14.94□□□□□ -0.02
VIM-208ENST00000497849 WHRNQ9P202 907 aa14.94□□□□□ -0.02
VIM-208ENST00000497849 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.94□□□□□ -0.02
VIM-208ENST00000497849 VWA7Q9Y334 891 aa14.94□□□□□ -0.02
VIM-208ENST00000497849 V9GYY5 206 aaPredicted RBP14.94□□□□□ -0.02
VIM-208ENST00000497849 SPACA6W5XKT8 324 aa14.94□□□□□ -0.02
VIM-208ENST00000497849 UQCRHLA0A096LP55 91 aa14.93□□□□□ -0.02
VIM-208ENST00000497849 C2orf92A0A1B0GVN3 265 aa14.93□□□□□ -0.02
VIM-208ENST00000497849 CAPN14A8MX76 684 aa14.93□□□□□ -0.02
VIM-208ENST00000497849 SMNDC1O75940 238 aaKnown RBP eCLIP14.93□□□□□ -0.02
VIM-208ENST00000497849 ALOX15P16050 662 aaPredicted RBP14.93□□□□□ -0.02
VIM-208ENST00000497849 CD22P20273 847 aa14.93□□□□□ -0.02
VIM-208ENST00000497849 HNMTP50135 292 aa14.93□□□□□ -0.02
VIM-208ENST00000497849 CALCOCO2Q13137 446 aa14.93□□□□□ -0.02
VIM-208ENST00000497849 CRYMQ14894 314 aa14.93□□□□□ -0.02
VIM-208ENST00000497849 CLEC12BQ2HXU8 276 aa14.93□□□□□ -0.02
VIM-208ENST00000497849 GLE1Q53GS7 698 aaKnown RBP14.93□□□□□ -0.02
VIM-208ENST00000497849 ST13P4Q8IZP2 240 aaPredicted RBP14.93□□□□□ -0.02
VIM-208ENST00000497849 RHBDF1Q96CC6 855 aa14.93□□□□□ -0.02
VIM-208ENST00000497849 MS4A8Q9BY19 250 aa14.93□□□□□ -0.02
VIM-208ENST00000497849 REG4Q9BYZ8 158 aa14.93□□□□□ -0.02
VIM-208ENST00000497849 EHD1Q9H4M9 534 aa14.93□□□□□ -0.02
VIM-208ENST00000497849 CXorf56Q9H5V9 222 aa14.93□□□□□ -0.02
VIM-208ENST00000497849 RPF2Q9H7B2 306 aaKnown RBP14.93□□□□□ -0.02
VIM-208ENST00000497849 OARD1Q9Y530 152 aa14.93□□□□□ -0.02
VIM-208ENST00000497849 LRRC14BA6NHZ5 514 aa14.92□□□□□ -0.02
VIM-208ENST00000497849 OR6C76A6NM76 312 aa14.92□□□□□ -0.02
VIM-208ENST00000497849 WASHC1A8K0Z3 465 aa14.92□□□□□ -0.02
VIM-208ENST00000497849 WIPF1O43516 503 aa14.92□□□□□ -0.02
VIM-208ENST00000497849 PRKRAO75569 313 aaKnown RBP14.92□□□□□ -0.02
VIM-208ENST00000497849 TP53P04637 393 aaPredicted RBP14.92□□□□□ -0.02
VIM-208ENST00000497849 ZNF37AP17032 561 aaPredicted RBP14.92□□□□□ -0.02
VIM-208ENST00000497849 CHMP24386 653 aa14.92□□□□□ -0.02
VIM-208ENST00000497849 STARP49675 285 aa14.92□□□□□ -0.02
VIM-208ENST00000497849 PCDH1Q08174 1060 aa14.92□□□□□ -0.02
VIM-208ENST00000497849 BIKQ13323 160 aa14.92□□□□□ -0.02
VIM-208ENST00000497849 VEZF1Q14119 521 aa14.92□□□□□ -0.02
VIM-208ENST00000497849 DOC2AQ14183 400 aa14.92□□□□□ -0.02
VIM-208ENST00000497849 ERCC6LQ2NKX8 1250 aa14.92□□□□□ -0.02
VIM-208ENST00000497849 CHRFAM7AQ494W8 412 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms