RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 SLC30A2Q9BRI3 323 aa12.75□□□□□ -0.37
GPC1-209ENST00000495100 RSPH9Q9H1X1 276 aaPredicted RBP12.75□□□□□ -0.37
GPC1-209ENST00000495100 SDK2Q58EX2 2172 aa12.75□□□□□ -0.37
GPC1-209ENST00000495100 CEP250Q9BV73 2442 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 C1QTNF3-AMACRE9PGA6 284 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 SMLR1H3BR10 107 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 BTN3A3O00478 584 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 LDB3O75112 727 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 CA3P07451 260 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 TNFSF8P32971 234 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 RPS19P39019 145 aaKnown RBP12.74□□□□□ -0.37
GPC1-209ENST00000495100 MMP12P39900 470 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 GRSF1Q12849 480 aaKnown RBP eCLIP12.74□□□□□ -0.37
GPC1-209ENST00000495100 ERN2Q76MJ5 926 aaKnown RBP12.74□□□□□ -0.37
GPC1-209ENST00000495100 TMC8Q8IU68 726 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 SYNPOQ8N3V7 929 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 RHOXF1Q8NHV9 184 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 DYNC2LI1Q8TCX1 351 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 NLGN3Q9NZ94 848 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 MRPL15Q9P015 296 aaKnown RBP12.74□□□□□ -0.37
GPC1-209ENST00000495100 SERGEFQ9UGK8 458 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 NUFIP1Q9UHK0 495 aaKnown RBP12.74□□□□□ -0.37
GPC1-209ENST00000495100 TEKT2Q9UIF3 430 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 PSORS1C1Q9UIG5 152 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 CDH7Q9ULB5 785 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 GMEB1Q9Y692 573 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 TRBV5-3A0A0A0MS03 114 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 PRAMEF25A6NGN4 478 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 SMAD9O15198 467 aaKnown RBP12.74□□□□□ -0.37
GPC1-209ENST00000495100 ASGR2P07307 311 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 ACVR1BP36896 505 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 CD97P48960 835 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 PRLHRP49683 370 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 GABARAPL2P60520 117 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 CSTF1Q05048 431 aaKnown RBP12.74□□□□□ -0.37
GPC1-209ENST00000495100 SP140Q13342 867 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 GXYLT1Q4G148 440 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 CDC73Q6P1J9 531 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 FAM46DQ8NEK8 389 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 PJA1Q8NG27 643 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 CHTF18Q8WVB6 975 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 HRASLS5Q96KN8 279 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 C6orf106Q9H6K1 298 aaPredicted RBP12.74□□□□□ -0.37
GPC1-209ENST00000495100 TRPV5Q9NQA5 729 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 A0A1W2PQL4 384 aaPredicted RBP12.74□□□□□ -0.37
GPC1-209ENST00000495100 AGAP5A6NIR3 686 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 SULT1C4O75897 302 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 AHRP35869 848 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 CRYBA2P53672 197 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 TGM3Q08188 693 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 MTAPQ13126 283 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 ZNF630Q2M218 657 aaPredicted RBP12.74□□□□□ -0.37
GPC1-209ENST00000495100 SPATS1Q496A3 300 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 ZFP69Q49AA0 526 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 ZDHHC20Q5W0Z9 365 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 FAM109BQ6ICB4 259 aaPredicted RBP12.74□□□□□ -0.37
GPC1-209ENST00000495100 ZNF547Q8IVP9 402 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 ANKRD53Q8N9V6 530 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 CCL4L1Q8NHW4 92 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 PATE1Q8WXA2 126 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 CXorf40BQ96DE9 158 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 NECTIN3Q9NQS3 549 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 SPATA6Q9NWH7 488 aaPredicted RBP12.74□□□□□ -0.37
GPC1-209ENST00000495100 MAN2B2Q9Y2E5 1009 aa12.74□□□□□ -0.37
GPC1-209ENST00000495100 ZNF701M0R085 212 aaPredicted RBP12.73□□□□□ -0.37
GPC1-209ENST00000495100 CAPN5O15484 640 aaPredicted RBP12.73□□□□□ -0.37
GPC1-209ENST00000495100 HRO43593 1189 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 PRKYO43930 277 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 CPNE3O75131 537 aaKnown RBP12.73□□□□□ -0.37
GPC1-209ENST00000495100 GPX5O75715 221 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 SLC2A10O95528 541 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 GNSP15586 552 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 PCGF2P35227 344 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 RACK1P63244 317 aaKnown RBP12.73□□□□□ -0.37
GPC1-209ENST00000495100 CHRNEQ04844 493 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 KEAP1Q14145 624 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 SYT9Q86SS6 491 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 SLC9B2Q86UD5 537 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 MARCH9Q86YJ5 346 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 GALNT13Q8IUC8 556 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 KLHDC8AQ8IYD2 350 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 SHISA5Q8N114 240 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 ZNF433Q8N7K0 673 aaPredicted RBP12.73□□□□□ -0.37
GPC1-209ENST00000495100 MRPL43Q8N983 215 aaKnown RBP12.73□□□□□ -0.37
GPC1-209ENST00000495100 UBE2E3Q969T4 207 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 MCCC1Q96RQ3 725 aaPredicted RBP12.73□□□□□ -0.37
GPC1-209ENST00000495100 KLHL28Q9NXS3 571 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 EXO1Q9UQ84 846 aaKnown RBP12.73□□□□□ -0.37
GPC1-209ENST00000495100 ATG4BQ9Y4P1 393 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 ZNF780BQ9Y6R6 833 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 LAMA1P25391 3075 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 FAM240BA0A1B0GVZ2 78 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 CCDC182A6NF36 153 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 QSOX1O00391 747 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 STK25O00506 426 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 SLC9A3R1O14745 358 aaPredicted RBP12.73□□□□□ -0.37
GPC1-209ENST00000495100 FCMRO60667 390 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 GCM2O75603 506 aaPredicted RBP12.73□□□□□ -0.37
GPC1-209ENST00000495100 ITGAMP11215 1152 aa12.73□□□□□ -0.37
GPC1-209ENST00000495100 IMPDH2P12268 514 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms