RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-208ENST00000485792 LDB3O75112 727 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 ULK1O75385 1050 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 SPAG7O75391 227 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 AIFM1O95831 613 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 KRT6AP02538 564 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 KRT6BP04259 564 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 ATP1B1P05026 303 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 IFI6P09912 130 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 MYL2P10916 166 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 PCNAP12004 261 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 CD1EP15812 388 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 KRT15P19012 456 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 TACR1P25103 407 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 MST1P26927 711 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 ALDH3A1P30838 453 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 SERPINB5P36952 375 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 SSR2P43308 183 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 GSTM5P46439 218 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 KRT6CP48668 564 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 HLCSP50747 726 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 SLC37A1P57057 533 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 HMGCS1Q01581 520 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 FOLH1Q04609 750 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 MAP4K2Q12851 820 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 IFT88Q13099 833 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 TUBA3CQ13748 450 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 DDX39BQ13838 428 aaKnown RBP5.3□□□□□ -1.56
CUX1-208ENST00000485792 CDSNQ15517 529 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 LTB4RQ15722 352 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 BTBD16Q32M84 506 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 XKR7Q5GH72 579 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 NDUFAF5Q5TEU4 345 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 HIST2H2BCQ6DN03 193 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 SLC48A1Q6P1K1 146 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 TUBA3EQ6PEY2 450 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 SCIMPQ6UWF3 145 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 LRIG3Q6UXM1 1119 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 ZCCHC23Q6ZST2 131 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 NCCRP1Q6ZVX7 275 aaPredicted RBP5.3□□□□□ -1.56
CUX1-208ENST00000485792 RPS19BP1Q86WX3 136 aaKnown RBP5.3□□□□□ -1.56
CUX1-208ENST00000485792 NUDT13Q86X67 352 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 C10orf107Q8IVU9 208 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 SIAH3Q8IW03 269 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 OR4N5Q8IXE1 308 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 C9orf40Q8IXQ3 194 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 BEST3Q8N1M1 668 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 TMEM132CQ8N3T6 1108 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 ZNF615Q8N8J6 731 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 CDYL2Q8N8U2 506 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 C17orf47Q8NEP4 570 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 OR14A16Q8NHC5 309 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 DNAJB8Q8NHS0 232 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 C16orf52Q8NHV5 167 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 NUBPLQ8TB37 319 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 METTL6Q8TCB7 284 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 CPT1CQ8TCG5 803 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 ZNF675Q8TD23 568 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 TCP10LQ8TDR4 215 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 FAR1Q8WVX9 515 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 SELENOMQ8WWX9 145 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 HOXB13Q92826 284 aaPredicted RBP5.3□□□□□ -1.56
CUX1-208ENST00000485792 DAZLQ92904 295 aaKnown RBP5.3□□□□□ -1.56
CUX1-208ENST00000485792 VMP1Q96GC9 406 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 APIPQ96GX9 242 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 SENP5Q96HI0 755 aaPredicted RBP5.3□□□□□ -1.56
CUX1-208ENST00000485792 FBXL20Q96IG2 436 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 PKNOX2Q96KN3 472 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 ZIM3Q96PE6 472 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 KLHDC3Q9BQ90 382 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 CENPKQ9BS16 269 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 YIPF2Q9BWQ6 316 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 SHCBP1LQ9BZQ2 653 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 EPS8L2Q9H6S3 715 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 COPS7BQ9H9Q2 264 aaPredicted RBP5.3□□□□□ -1.56
CUX1-208ENST00000485792 CXorf21Q9HAI6 301 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 DEPPQ9NTK1 212 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 ASF1BQ9NVP2 202 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 AHSPQ9NZD4 102 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 EHD3Q9NZN3 535 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 PTGFRNQ9P2B2 879 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 MYOTQ9UBF9 498 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 TEKT2Q9UIF3 430 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 TIMM22Q9Y584 194 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 PCDHA9Q9Y5H5 950 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 DNAJC15Q9Y5T4 150 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 LRBAP50851 2863 aa5.3□□□□□ -1.56
CUX1-208ENST00000485792 MAST4O15021 2626 aa5.29□□□□□ -1.56
CUX1-208ENST00000485792 GLOD5A6NK44 160 aa5.29□□□□□ -1.56
CUX1-208ENST00000485792 A8MUA0 341 aa5.29□□□□□ -1.56
CUX1-208ENST00000485792 C17orf105B2RV13 164 aa5.29□□□□□ -1.56
CUX1-208ENST00000485792 TCP11X1B4DZS4 312 aa5.29□□□□□ -1.56
CUX1-208ENST00000485792 TM9SF1O15321 606 aa5.29□□□□□ -1.56
CUX1-208ENST00000485792 BIRC5O15392 142 aa5.29□□□□□ -1.56
CUX1-208ENST00000485792 ITM2AO43736 263 aa5.29□□□□□ -1.56
CUX1-208ENST00000485792 NME2P1O60361 137 aa5.29□□□□□ -1.56
CUX1-208ENST00000485792 PRAMEF2O60811 474 aa5.29□□□□□ -1.56
CUX1-208ENST00000485792 SEMA7AO75326 666 aa5.29□□□□□ -1.56
CUX1-208ENST00000485792 FBXO24O75426 580 aa5.29□□□□□ -1.56
CUX1-208ENST00000485792 LYPLA1O75608 230 aaPredicted RBP5.29□□□□□ -1.56
CUX1-208ENST00000485792 ZFAND5O76080 213 aa5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms