RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 KHDRBS2Q5VWX1 349 aaKnown RBP6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 LIPJQ5W064 366 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 METTL2BQ6P1Q9 378 aaKnown RBP6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 MTFR2Q6P444 385 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 ZNF793Q6ZN11 406 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 GALNTL5Q7Z4T8 443 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 GOLGA7Q7Z5G4 137 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 PNPLA5Q7Z6Z6 429 aaPredicted RBP6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 MYLK4Q86YV6 388 aaPredicted RBP6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 CTAGE4Q8IX94 777 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 TMEM132CQ8N3T6 1108 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 TMEM156Q8N614 296 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 ACOT4Q8N9L9 421 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 OR7G3Q8NG95 312 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 HUS1BQ8NHY5 278 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 THAP3Q8WTV1 239 aaPredicted RBP6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 SLC44A1Q8WWI5 657 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 IFT81Q8WYA0 676 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 DAZLQ92904 295 aaKnown RBP6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 NCLNQ969V3 563 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 REPS1Q96D71 796 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 MAGED4Q96JG8 741 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 GPR137Q96N19 417 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 FUT8Q9BYC5 575 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 HES7Q9BYE0 225 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 VPS11Q9H270 941 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 CDC42EP4Q9H3Q1 356 aaKnown RBP6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 TRIM45Q9H8W5 580 aaPredicted RBP6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 ACTR8Q9H981 624 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 MS4A12Q9NXJ0 267 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 KCMF1Q9P0J7 381 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 CPSF2Q9P2I0 782 aaKnown RBP6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 FBXW2Q9UKT8 454 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 TMCO1Q9UM00 188 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 KLF13Q9Y2Y9 288 aaPredicted RBP6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 CLDN16Q9Y5I7 305 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 TNPO3Q9Y5L0 923 aaKnown RBP6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 CLCA3PQ9Y6N3 262 aa6.32□□□□□ -1.4
CCDC88A-213ENST00000476903 DNAJC13O75165 2243 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 NPIPA5E9PKD4 350 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 H0YIV9 168 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 KLRC4-KLRK1H3BQV0 150 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 SAP18O00422 153 aaKnown RBP6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 RTCAO00442 366 aaKnown RBP6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 CCL21O00585 134 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 SLC19A2O60779 497 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 LDB3O75112 727 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 SH3BGRLO75368 114 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 ITGA10O75578 1167 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 ZFAND5O76080 213 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 SCELO95171 688 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 RBP1P09455 135 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 COX7A2P14406 83 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 ZNF24P17028 368 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 TNNI3P19429 210 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 CPN2P22792 545 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 CNTFP26441 200 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 DCTP40126 519 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 ARL1P40616 181 aaPredicted RBP6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 CA7P43166 264 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 SSR4P51571 173 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 GPR143P51810 404 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 ARFIP1P53367 373 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 KLF10Q13118 480 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 SLAMF1Q13291 335 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 DDX39BQ13838 428 aaKnown RBP6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 GTF2H2Q13888 395 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 PCBP2Q15366 365 aaKnown RBP eCLIP6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 TECRLQ5HYJ1 363 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 UBAP2Q5T6F2 1119 aaKnown RBP6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 DEPDC1Q5TB30 811 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 OR4C11Q6IEV9 310 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 GTF2H2CQ6P1K8 395 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 HSDL2Q6YN16 418 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 GPALPP1Q8IXQ4 340 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 CYP4Z2PQ8N1L4 340 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 POGLUT1Q8NBL1 392 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 NOA1Q8NC60 698 aaKnown RBP6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 MORN4Q8NDC4 146 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 OR14A16Q8NHC5 309 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 PTPMT1Q8WUK0 201 aaPredicted RBP6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 RGMAQ96B86 450 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 GPR78Q96P69 363 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 PAFAH2Q99487 392 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 MTERF1Q99551 399 aaKnown RBP6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 MAPKAP1Q9BPZ7 522 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 ALOXE3Q9BYJ1 711 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 OR51B5Q9H339 312 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 GP6Q9HCN6 339 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 DMRT3Q9NQL9 472 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 PHF11Q9UIL8 331 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 ZNF180Q9UJW8 692 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 ZNF223Q9UK11 482 aaPredicted RBP6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 NPIPA1Q9UND3 350 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 YARS2Q9Y2Z4 477 aaKnown RBP6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 CACNA1CQ13936 2221 aa6.31□□□□□ -1.4
CCDC88A-213ENST00000476903 ZNF407Q9C0G0 2248 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 A0A087WUV0 522 aaPredicted RBP6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 LRRC14BA6NHZ5 514 aa6.3□□□□□ -1.4
CCDC88A-213ENST00000476903 A8MVJ9 347 aa6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms