RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 PLCE1Q9P212 2302 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 IQANK1A0A1B0GTG1 560 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 PABPN1LA6NDY0 278 aaKnown RBP7.17□□□□□ -1.26
USP54-211ENST00000474929 SHISA9B4DS77 424 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 E5RI56 91 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 GOLGA8MH3BSY2 632 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 PSMD3O43242 534 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 NDUFS3O75489 264 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 IGKV3-11P04433 115 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 MPC1LP0DKB6 136 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 SMIM10L1P0DMW3 83 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 SCTRP47872 440 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 NEK2P51955 445 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 C21orf58P58505 322 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 ACVR1Q04771 509 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 SP140Q13342 867 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 TSNAXIP1Q2TAA8 658 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 LRRC8EQ6NSJ5 796 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 RNF111Q6ZNA4 994 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 CLNKQ7Z7G1 428 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 SVOPLQ8N434 492 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 BPIFB2Q8N4F0 458 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 ZNF321PQ8N8H1 164 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 TTLQ8NG68 377 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 OR4K1Q8NGD4 311 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 PIWIL2Q8TC59 973 aaKnown RBP7.17□□□□□ -1.26
USP54-211ENST00000474929 SMIM10Q96HG1 83 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 SENP5Q96HI0 755 aaPredicted RBP7.17□□□□□ -1.26
USP54-211ENST00000474929 DGAT2Q96PD7 388 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 RSPO3Q9BXY4 272 aaPredicted RBP7.17□□□□□ -1.26
USP54-211ENST00000474929 BPESC1Q9GZL8 116 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 CDC42EP4Q9H3Q1 356 aaKnown RBP7.17□□□□□ -1.26
USP54-211ENST00000474929 COPS7BQ9H9Q2 264 aaPredicted RBP7.17□□□□□ -1.26
USP54-211ENST00000474929 PAQR5Q9NXK6 330 aaPredicted RBP7.17□□□□□ -1.26
USP54-211ENST00000474929 HEY2Q9UBP5 337 aa7.17□□□□□ -1.26
USP54-211ENST00000474929 TSR3Q9UJK0 312 aaKnown RBP7.17□□□□□ -1.26
USP54-211ENST00000474929 FBXO9Q9UK97 447 aaPredicted RBP7.17□□□□□ -1.26
USP54-211ENST00000474929 EXO1Q9UQ84 846 aaKnown RBP7.17□□□□□ -1.26
USP54-211ENST00000474929 BZW2Q9Y6E2 419 aaKnown RBP7.17□□□□□ -1.26
USP54-211ENST00000474929 A0A1B0GUS0 222 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 CCT8L1PA6NM43 557 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 H7C0C1 242 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 ABCD4O14678 606 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 SS18L1O75177 396 aaPredicted RBP7.16□□□□□ -1.26
USP54-211ENST00000474929 RGS9O75916 674 aaPredicted RBP7.16□□□□□ -1.26
USP54-211ENST00000474929 B3GALT4O96024 378 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 TACSTD2P09758 323 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 SAT1P21673 171 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 RBL1P28749 1068 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 STT3AP46977 705 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 ATP5OP48047 213 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 BTN3A2P78410 334 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 IRF9Q00978 393 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 CDH17Q12864 832 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 DOC2AQ14183 400 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 EBPQ15125 230 aaKnown RBP7.16□□□□□ -1.26
USP54-211ENST00000474929 PON3Q15166 354 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 TAB1Q15750 504 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 CARTPTQ16568 116 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 TSTD2Q5T7W7 516 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 CDKAL1Q5VV42 579 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 HLA-DQA1Q5Y7H0 255 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 TRIM40Q6P9F5 258 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 FIGNL1Q6PIW4 674 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 TMEM108Q6UXF1 575 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 RBMS3Q6XE24 437 aaKnown RBP7.16□□□□□ -1.26
USP54-211ENST00000474929 ZNF793Q6ZN11 406 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 ZNF534Q76KX8 674 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 TRIM58Q8NG06 486 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 CTNNBL1Q8WYA6 563 aaPredicted RBP7.16□□□□□ -1.26
USP54-211ENST00000474929 FIG4Q92562 907 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 KISS1RQ969F8 398 aaPredicted RBP7.16□□□□□ -1.26
USP54-211ENST00000474929 MTBPQ96DY7 904 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 GBP4Q96PP9 640 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 SERINC2Q96SA4 455 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 CCT8L2Q96SF2 557 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 AIF1LQ9BQI0 150 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 PINK1Q9BXM7 581 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 LMBRD1Q9NUN5 540 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 MOCS1Q9NZB8 636 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 KLRF1Q9NZS2 232 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 KLHL42Q9P2K6 505 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 XPR1Q9UBH6 696 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 STOML1Q9UBI4 398 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 DKKL1Q9UK85 242 aa7.16□□□□□ -1.26
USP54-211ENST00000474929 GOLGA8QA0A0J9YX86 632 aa7.15□□□□□ -1.26
USP54-211ENST00000474929 GOLGA8OA6NCC3 632 aa7.15□□□□□ -1.26
USP54-211ENST00000474929 GOLGA8NF8WBI6 632 aa7.15□□□□□ -1.26
USP54-211ENST00000474929 GOLGA8RI6L899 631 aa7.15□□□□□ -1.26
USP54-211ENST00000474929 APOC4-APOC2K7ER74 178 aa7.15□□□□□ -1.26
USP54-211ENST00000474929 APOC2P02655 101 aa7.15□□□□□ -1.26
USP54-211ENST00000474929 TUBBP07437 444 aa7.15□□□□□ -1.26
USP54-211ENST00000474929 ERCC1P07992 297 aaPredicted RBP7.15□□□□□ -1.26
USP54-211ENST00000474929 H2AFZP0C0S5 128 aa7.15□□□□□ -1.26
USP54-211ENST00000474929 DHRS4L1P0CG22 281 aa7.15□□□□□ -1.26
USP54-211ENST00000474929 NAGAP17050 411 aa7.15□□□□□ -1.26
USP54-211ENST00000474929 HNF4AP41235 474 aa7.15□□□□□ -1.26
USP54-211ENST00000474929 CDKN2BP42772 138 aa7.15□□□□□ -1.26
USP54-211ENST00000474929 FABP6P51161 128 aa7.15□□□□□ -1.26
USP54-211ENST00000474929 SLC37A1P57057 533 aa7.15□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms