RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 MFSD7Q6UXD7 560 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 CCBE1Q6UXH8 406 aaPredicted RBP2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 WDR88Q6ZMY6 472 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 Q6ZRG5 221 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 MCM10Q7L590 875 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 MIER3Q7Z3K6 550 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 CARM1Q86X55 608 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 PRR22Q8IZ63 422 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 GVQW1Q8N7I0 195 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 SPPL2AQ8TCT8 520 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 AGAP11Q8TF27 550 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 PCNPQ8WW12 178 aaKnown RBP2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 P3H4Q92791 437 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 TMEM186Q96B77 213 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 RAB39BQ96DA2 213 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 RPGRIP1Q96KN7 1286 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 RUNDC3BQ96NL0 473 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 TNFRSF13CQ96RJ3 184 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 XPO4Q9C0E2 1151 aaKnown RBP2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 NMUR1Q9HB89 426 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 COPS7AQ9UBW8 275 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 NARFQ9UHQ1 456 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 DIMT1Q9UNQ2 313 aaKnown RBP2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 NIP7Q9Y221 180 aaKnown RBP eCLIP2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 NTNG1Q9Y2I2 539 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 NPC1L1Q9UHC9 1359 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 PTPRUQ92729 1446 aa2.33□□□□□ -2.04
CCDC88A-212ENST00000474059 A0A0U1RRA0 63 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 LOC390937A0A1W2PQ73 354 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 CFAP73A6NFT4 308 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 IGLON5A6NGN9 336 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 TMCO5BA8MYB1 307 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 E9PAM4 449 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 K7EQG2 157 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 LRP3O75074 770 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 OR6B1O95007 311 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 CXCL10P02778 98 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 CCDC192P0DO97 292 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 GAP43P17677 238 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 ACP1P24666 158 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 MARCKSP29966 332 aaPredicted RBP2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 SFNP31947 248 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 ACADSBP45954 432 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 ATP4BP51164 291 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 CCL11P51671 97 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 NDUFV3P56181 108 aaKnown RBP2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 NLRP11P59045 1033 aaKnown RBP2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 SSTP61278 116 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 RPS4XP62701 263 aaKnown RBP2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 IL1RL1Q01638 556 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 ITPK1Q13572 414 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 ECSCRQ19T08 205 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 CMPK2Q5EBM0 449 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 C1orf189Q5VU69 101 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 LIPJQ5W064 366 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 HIST2H2AA3Q6FI13 130 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 OR6B2Q6IFH4 312 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 CDC42EP5Q6NZY7 148 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 NEK5Q6P3R8 708 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 BNIPLQ7Z465 357 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 TAF8Q7Z7C8 310 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 RPAINQ86UA6 219 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 ELMOD2Q8IZ81 293 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 CD177Q8N6Q3 437 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 LEMD2Q8NC56 503 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 ZNRF1Q8ND25 227 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 CHDHQ8NE62 594 aaPredicted RBP2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 PNPLA2Q96AD5 504 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 COG3Q96JB2 828 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 CDHR1Q96JP9 859 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 RCHY1Q96PM5 261 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 TAAR6Q96RI8 345 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 COQ7Q99807 217 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 SPAG8Q99932 426 aaPredicted RBP2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 CCDC28BQ9BUN5 200 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 STRADBQ9C0K7 418 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 ASB8Q9H765 288 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 NT5DC2Q9H857 520 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 SP140LQ9H930 580 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 SLC25A19Q9HC21 320 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 DEPPQ9NTK1 212 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 NINJ2Q9NZG7 142 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 THYN1Q9P016 225 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 VPS54Q9P1Q0 977 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 ERVK-18Q9QC07 812 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 SPASTQ9UBP0 616 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 CCPG1Q9ULG6 757 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 NUDCQ9Y266 331 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 AUP1Q9Y679 476 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 SALL1Q9NSC2 1324 aa2.32□□□□□ -2.04
CCDC88A-212ENST00000474059 TRGV8A0A0C4DH27 118 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 RNF103-CHMP3A0A140T963 221 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 TMEM89A2RUT3 159 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 KRT87PA6NCN2 255 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 ARHGAP42A6NI28 874 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 MEI4A8MW99 385 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 H0Y9J4 135 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 SH2D1BO14796 132 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 TSPAN2O60636 221 aa2.31□□□□□ -2.04
CCDC88A-212ENST00000474059 SYNGR4O95473 234 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms