RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 SFXN1Q9H9B4 322 aa18.02■□□□□ 0.47
VIM-203ENST00000469543 TVP23BQ9NYZ1 205 aa18.02■□□□□ 0.47
VIM-203ENST00000469543 K7EQS6 105 aa18.01■□□□□ 0.47
VIM-203ENST00000469543 TBX1O43435 398 aa18.01■□□□□ 0.47
VIM-203ENST00000469543 RPLP0P05388 317 aaKnown RBP18.01■□□□□ 0.47
VIM-203ENST00000469543 IGFALSP35858 605 aa18.01■□□□□ 0.47
VIM-203ENST00000469543 MLLT1Q03111 559 aaPredicted RBP18.01■□□□□ 0.47
VIM-203ENST00000469543 TFF2Q03403 129 aa18.01■□□□□ 0.47
VIM-203ENST00000469543 IRF3Q14653 427 aa18.01■□□□□ 0.47
VIM-203ENST00000469543 SLC9A5Q14940 896 aa18.01■□□□□ 0.47
VIM-203ENST00000469543 LTB4RQ15722 352 aa18.01■□□□□ 0.47
VIM-203ENST00000469543 SSX1Q16384 188 aa18.01■□□□□ 0.47
VIM-203ENST00000469543 ZER1Q7Z7L7 766 aa18.01■□□□□ 0.47
VIM-203ENST00000469543 SLC22A16Q86VW1 577 aa18.01■□□□□ 0.47
VIM-203ENST00000469543 TBC1D19Q8N5T2 526 aa18.01■□□□□ 0.47
VIM-203ENST00000469543 FAM83FQ8NEG4 500 aaPredicted RBP18.01■□□□□ 0.47
VIM-203ENST00000469543 SLC35G5Q96KT7 338 aa18.01■□□□□ 0.47
VIM-203ENST00000469543 MAPKAP1Q9BPZ7 522 aa18.01■□□□□ 0.47
VIM-203ENST00000469543 BCL7BQ9BQE9 202 aa18.01■□□□□ 0.47
VIM-203ENST00000469543 PCBD2Q9H0N5 130 aa18.01■□□□□ 0.47
VIM-203ENST00000469543 GDE1Q9NZC3 331 aa18.01■□□□□ 0.47
VIM-203ENST00000469543 ARHGAP33O14559 1287 aa18.01■□□□□ 0.47
VIM-203ENST00000469543 TP53P04637 393 aaPredicted RBP18.01■□□□□ 0.47
VIM-203ENST00000469543 OSMP13725 252 aa18.01■□□□□ 0.47
VIM-203ENST00000469543 HIST1H1TP22492 207 aaPredicted RBP18.01■□□□□ 0.47
VIM-203ENST00000469543 XKP51811 444 aa18.01■□□□□ 0.47
VIM-203ENST00000469543 PPP2CBP62714 309 aa18.01■□□□□ 0.47
VIM-203ENST00000469543 PPP2CAP67775 309 aa18.01■□□□□ 0.47
VIM-203ENST00000469543 FAM46DQ8NEK8 389 aa18.01■□□□□ 0.47
VIM-203ENST00000469543 OR2L3Q8NG85 312 aa18.01■□□□□ 0.47
VIM-203ENST00000469543 PHPT1Q9NRX4 125 aaPredicted RBP18.01■□□□□ 0.47
VIM-203ENST00000469543 TBC1D29Q9UFV1 150 aa18.01■□□□□ 0.47
VIM-203ENST00000469543 APOBEC3BQ9UH17 382 aaKnown RBP18.01■□□□□ 0.47
VIM-203ENST00000469543 GPR55Q9Y2T6 319 aaPredicted RBP18.01■□□□□ 0.47
VIM-203ENST00000469543 ASB4Q9Y574 426 aa18.01■□□□□ 0.47
VIM-203ENST00000469543 PNMA8CA0A1B0GUJ8 204 aa18■□□□□ 0.47
VIM-203ENST00000469543 TLX2O43763 284 aaPredicted RBP18■□□□□ 0.47
VIM-203ENST00000469543 MRPS14O60783 128 aaKnown RBP18■□□□□ 0.47
VIM-203ENST00000469543 ADAM23O75077 832 aa18■□□□□ 0.47
VIM-203ENST00000469543 AIFM1O95831 613 aa18■□□□□ 0.47
VIM-203ENST00000469543 MMP11P24347 488 aa18■□□□□ 0.47
VIM-203ENST00000469543 RNF144AP50876 292 aaPredicted RBP18■□□□□ 0.47
VIM-203ENST00000469543 LRRC32Q14392 662 aa18■□□□□ 0.47
VIM-203ENST00000469543 TPRG1LQ5T0D9 272 aa18■□□□□ 0.47
VIM-203ENST00000469543 PLAG1Q6DJT9 500 aa18■□□□□ 0.47
VIM-203ENST00000469543 ABHD17CQ6PCB6 329 aa18■□□□□ 0.47
VIM-203ENST00000469543 SLC34A3Q8N130 599 aa18■□□□□ 0.47
VIM-203ENST00000469543 OR9A2Q8NGT5 310 aa18■□□□□ 0.47
VIM-203ENST00000469543 S100ZQ8WXG8 99 aa18■□□□□ 0.47
VIM-203ENST00000469543 FCGR1BQ92637 280 aa18■□□□□ 0.47
VIM-203ENST00000469543 COL26A1Q96A83 441 aa18■□□□□ 0.47
VIM-203ENST00000469543 DACH2Q96NX9 599 aa18■□□□□ 0.47
VIM-203ENST00000469543 QRFPRQ96P65 431 aa18■□□□□ 0.47
VIM-203ENST00000469543 MAN2C1Q9NTJ4 1040 aa18■□□□□ 0.47
VIM-203ENST00000469543 SACM1LQ9NTJ5 587 aa18■□□□□ 0.47
VIM-203ENST00000469543 TMEM74BQ9NUR3 256 aa18■□□□□ 0.47
VIM-203ENST00000469543 CLN6Q9NWW5 311 aa18■□□□□ 0.47
VIM-203ENST00000469543 NTNG1Q9Y2I2 539 aa18■□□□□ 0.47
VIM-203ENST00000469543 DENND4AQ7Z401 1863 aa18■□□□□ 0.47
VIM-203ENST00000469543 CFAP54Q96N23 3096 aa18■□□□□ 0.47
VIM-203ENST00000469543 ARHGEF17Q96PE2 2063 aaPredicted RBP18■□□□□ 0.47
VIM-203ENST00000469543 METTL15A6NJ78 407 aa18■□□□□ 0.47
VIM-203ENST00000469543 ISM1B1AKI9 464 aa18■□□□□ 0.47
VIM-203ENST00000469543 PRKYO43930 277 aa18■□□□□ 0.47
VIM-203ENST00000469543 KIAA0513O60268 411 aa18■□□□□ 0.47
VIM-203ENST00000469543 CNOT3O75175 753 aaKnown RBP18■□□□□ 0.47
VIM-203ENST00000469543 CLEC3AO75596 197 aa18■□□□□ 0.47
VIM-203ENST00000469543 C5AR1P21730 350 aa18■□□□□ 0.47
VIM-203ENST00000469543 HSD17B2P37059 387 aa18■□□□□ 0.47
VIM-203ENST00000469543 MAP4K2Q12851 820 aa18■□□□□ 0.47
VIM-203ENST00000469543 GPAT3Q53EU6 434 aa18■□□□□ 0.47
VIM-203ENST00000469543 NIPAL1Q6NVV3 410 aa18■□□□□ 0.47
VIM-203ENST00000469543 IQCHQ86VS3 1027 aa18■□□□□ 0.47
VIM-203ENST00000469543 OR4N5Q8IXE1 308 aa18■□□□□ 0.47
VIM-203ENST00000469543 CADM3Q8N126 398 aa18■□□□□ 0.47
VIM-203ENST00000469543 ZNF607Q96SK3 696 aa18■□□□□ 0.47
VIM-203ENST00000469543 KCNS3Q9BQ31 491 aa18■□□□□ 0.47
VIM-203ENST00000469543 P2RX2Q9UBL9 471 aa18■□□□□ 0.47
VIM-203ENST00000469543 GPC6Q9Y625 555 aaPredicted RBP18■□□□□ 0.47
VIM-203ENST00000469543 FCMRO60667 390 aa17.99■□□□□ 0.47
VIM-203ENST00000469543 APODP05090 189 aa17.99■□□□□ 0.47
VIM-203ENST00000469543 TGM1P22735 817 aa17.99■□□□□ 0.47
VIM-203ENST00000469543 ATP5A1P25705 553 aaKnown RBP17.99■□□□□ 0.47
VIM-203ENST00000469543 MC3RP41968 323 aa17.99■□□□□ 0.47
VIM-203ENST00000469543 RPE65Q16518 533 aa17.99■□□□□ 0.47
VIM-203ENST00000469543 TOR1AIP1Q5JTV8 583 aa17.99■□□□□ 0.47
VIM-203ENST00000469543 ACSM5Q6NUN0 579 aa17.99■□□□□ 0.47
VIM-203ENST00000469543 ATCAYQ86WG3 371 aa17.99■□□□□ 0.47
VIM-203ENST00000469543 FRMD1Q8N878 549 aa17.99■□□□□ 0.47
VIM-203ENST00000469543 HTRA1Q92743 480 aa17.99■□□□□ 0.47
VIM-203ENST00000469543 ARSGQ96EG1 525 aa17.99■□□□□ 0.47
VIM-203ENST00000469543 PHOX2BQ99453 314 aa17.99■□□□□ 0.47
VIM-203ENST00000469543 PLA2G12AQ9BZM1 189 aa17.99■□□□□ 0.47
VIM-203ENST00000469543 GPR52Q9Y2T5 361 aa17.99■□□□□ 0.47
VIM-203ENST00000469543 AGRPO00253 132 aa17.99■□□□□ 0.47
VIM-203ENST00000469543 BTN3A3O00478 584 aa17.99■□□□□ 0.47
VIM-203ENST00000469543 KPNA4O00629 521 aaPredicted RBP17.99■□□□□ 0.47
VIM-203ENST00000469543 CTDSP2O14595 271 aa17.99■□□□□ 0.47
VIM-203ENST00000469543 SERPINB7O75635 380 aa17.99■□□□□ 0.47
VIM-203ENST00000469543 GPX5O75715 221 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms