RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 A0A0G2JNJ9 132 aa15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 TP53I11O14683 189 aa15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 TRIM3O75382 744 aaPredicted RBP15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 LRATO95237 230 aa15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 OTCP00480 354 aa15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 ECHS1P30084 290 aa15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 TMED10P49755 219 aaKnown RBP15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 XKP51811 444 aa15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 RPS6KA2Q15349 733 aa15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 SGO1Q5FBB7 561 aa15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 C6orf163Q5TEZ5 329 aa15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 RPS27LQ71UM5 84 aaKnown RBP15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 ZNF615Q8N8J6 731 aa15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 MNS1Q8NEH6 495 aa15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 OR7G1Q8NGA0 311 aa15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 NEIL3Q8TAT5 605 aa15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 TRPC4APQ8TEL6 797 aa15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 ZNF483Q8TF39 744 aaPredicted RBP15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 DIO2Q92813 273 aa15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 ADIPOR1Q96A54 375 aa15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 ZNF597Q96LX8 424 aa15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 JSRP1Q96MG2 331 aaPredicted RBP15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 C1QTNF3Q9BXJ4 246 aa15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 OR10A5Q9H207 317 aa15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 SLC6A15Q9H2J7 730 aa15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 Q9UFV3 132 aa15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 SLC12A4Q9UP95 1085 aa15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 PCDHA9Q9Y5H5 950 aa15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 NPFFR2Q9Y5X5 522 aa15.22■□□□□ 0.03
CCDC28B-204ENST00000469003 A0A087WUV0 522 aaPredicted RBP15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 A0A1B0GTL3 188 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 FAM47E-STBD1D6RA91 191 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 GUCY1B2O75343 617 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 SBK3P0C264 359 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 CPMP14384 443 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 PORP16435 677 aaPredicted RBP15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 NT5EP21589 574 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 GDF1P27539 372 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 ADH7P40394 386 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 MAPK12P53778 367 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 NRG3P56975 720 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 FBXW4P57775 412 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 KRTAP21-3Q3LHN1 58 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 GLE1Q53GS7 698 aaKnown RBP15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 RIPPLY2Q5TAB7 128 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 TMEM198Q66K66 360 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 LETMD1Q6P1Q0 360 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 TMEM64Q6YI46 380 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 COMMD6Q7Z4G1 85 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 CDH24Q86UP0 819 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 CLYBLQ8N0X4 340 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 LIX1Q8N485 282 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 C17orf47Q8NEP4 570 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 SPPL2AQ8TCT8 520 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 SECISBP2Q96T21 854 aaKnown RBP15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 BRF2Q9HAW0 419 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 SLC24A3Q9HC58 644 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 FARSBQ9NSD9 589 aaKnown RBP15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 ALKBH4Q9NXW9 302 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 KCNN3Q9UGI6 736 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 CES1P1Q9UKY3 287 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 SNX6Q9UNH7 406 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 ARHGAP21Q5T5U3 1957 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 EXPH5Q8NEV8 1989 aa15.21■□□□□ 0.03
CCDC28B-204ENST00000469003 AKAP9Q99996 3911 aa15.2■□□□□ 0.02
CCDC28B-204ENST00000469003 C1orf226A1L170 272 aa15.2■□□□□ 0.02
CCDC28B-204ENST00000469003 GOLGA6L10A6NI86 522 aa15.2■□□□□ 0.02
CCDC28B-204ENST00000469003 A8MT66 165 aa15.2■□□□□ 0.02
CCDC28B-204ENST00000469003 PPP6CO00743 305 aa15.2■□□□□ 0.02
CCDC28B-204ENST00000469003 SNX4O95219 450 aa15.2■□□□□ 0.02
CCDC28B-204ENST00000469003 PDYNP01213 254 aa15.2■□□□□ 0.02
CCDC28B-204ENST00000469003 SNRPAP09012 282 aaKnown RBP15.2■□□□□ 0.02
CCDC28B-204ENST00000469003 S1PR1P21453 382 aa15.2■□□□□ 0.02
CCDC28B-204ENST00000469003 CDH13P55290 713 aa15.2■□□□□ 0.02
CCDC28B-204ENST00000469003 RPP38P78345 283 aaKnown RBP15.2■□□□□ 0.02
CCDC28B-204ENST00000469003 GALNT1Q10472 559 aaPredicted RBP15.2■□□□□ 0.02
CCDC28B-204ENST00000469003 SLC48A1Q6P1K1 146 aa15.2■□□□□ 0.02
CCDC28B-204ENST00000469003 TMEM151AQ8N4L1 468 aa15.2■□□□□ 0.02
CCDC28B-204ENST00000469003 UHMK1Q8TAS1 419 aaKnown RBP15.2■□□□□ 0.02
CCDC28B-204ENST00000469003 SELENOMQ8WWX9 145 aa15.2■□□□□ 0.02
CCDC28B-204ENST00000469003 ZNF592Q92610 1267 aa15.2■□□□□ 0.02
CCDC28B-204ENST00000469003 ANGPTL4Q9BY76 406 aa15.2■□□□□ 0.02
CCDC28B-204ENST00000469003 TRPS1Q9UHF7 1281 aa15.2■□□□□ 0.02
CCDC28B-204ENST00000469003 FREM3P0C091 2139 aa15.19■□□□□ 0.02
CCDC28B-204ENST00000469003 CTAGE8P0CG41 777 aa15.19■□□□□ 0.02
CCDC28B-204ENST00000469003 TSPAN8P19075 237 aa15.19■□□□□ 0.02
CCDC28B-204ENST00000469003 GPX3P22352 226 aa15.19■□□□□ 0.02
CCDC28B-204ENST00000469003 TRPC1P48995 793 aa15.19■□□□□ 0.02
CCDC28B-204ENST00000469003 PRICKLE4Q2TBC4 344 aa15.19■□□□□ 0.02
CCDC28B-204ENST00000469003 SLC25A35Q3KQZ1 300 aa15.19■□□□□ 0.02
CCDC28B-204ENST00000469003 LGSNQ5TDP6 509 aa15.19■□□□□ 0.02
CCDC28B-204ENST00000469003 BICRALQ6AI39 1079 aa15.19■□□□□ 0.02
CCDC28B-204ENST00000469003 LIX1LQ8IVB5 337 aa15.19■□□□□ 0.02
CCDC28B-204ENST00000469003 CTAGE4Q8IX94 777 aa15.19■□□□□ 0.02
CCDC28B-204ENST00000469003 ULK2Q8IYT8 1036 aa15.19■□□□□ 0.02
CCDC28B-204ENST00000469003 VWA5B2Q8N398 1253 aa15.19■□□□□ 0.02
CCDC28B-204ENST00000469003 TM4SF18Q96CE8 201 aa15.19■□□□□ 0.02
CCDC28B-204ENST00000469003 RILPQ96NA2 401 aa15.19■□□□□ 0.02
CCDC28B-204ENST00000469003 ZNF559Q9BR84 538 aa15.19■□□□□ 0.02
CCDC28B-204ENST00000469003 NMRK1Q9NWW6 199 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms