RNA–Protein interactions for RNA: ENST00000467838.2

SEC16A-208, Transcript of SEC16 homolog A, endoplasmic reticulum export factor, human

TSL 2

Gene SEC16A, Length 1,988 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SEC16A-208	ENST00000467838	CELF5	Q8N6W0	485 aa	Known RBP	13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	ZNF485	Q8NCK3	441 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	MORN4	Q8NDC4	146 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	ZFAND1	Q8TCF1	268 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	SMPDL3A	Q92484	453 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	TM4SF18	Q96CE8	201 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	LRR1	Q96L50	414 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	MRGPRX3	Q96LB0	322 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	LINC00615	Q96LM1	132 aa	Predicted RBP	13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	ZNF558	Q96NG5	402 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	TMEM106C	Q9BVX2	250 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	PPP1R3E	Q9H7J1	279 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	MVB12B	Q9H7P6	319 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	NIPAL2	Q9H841	368 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	SPIN1	Q9Y657	262 aa	Predicted RBP	13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	PRODH	O43272	600 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	PI15	O43692	258 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	TLX2	O43763	284 aa	Predicted RBP	13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	NR2F6	P10588	404 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	MYL12A	P19105	171 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	TNNI3	P19429	210 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	MMP11	P24347	488 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	ACADL	P28330	430 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	ERP29	P30040	261 aa	Known RBP	13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	BSG	P35613	385 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	GIPR	P48546	466 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	HOXC5	Q00444	222 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	CNTN1	Q12860	1018 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	GINS1	Q14691	196 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	MLC1	Q15049	377 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	ARSI	Q5FYB1	569 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	PRAMEF14	Q5SWL7	426 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	PRAMEF13	Q5VWM6	474 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	13.72	□□□□□ -0.21	1e-11	■■■■□ 20.3
SEC16A-208	ENST00000467838	ZER1	Q7Z7L7	766 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	COMTD1	Q86VU5	262 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	DUSP18	Q8NEJ0	188 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	TMEM163	Q8TC26	289 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	DTD2	Q96FN9	168 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	LRIG1	Q96JA1	1093 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	TREX2	Q9BQ50	279 aa	Predicted RBP	13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	SLC46A2	Q9BY10	475 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	FBXW2	Q9UKT8	454 aa		13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	EXOSC1	Q9Y3B2	195 aa	Known RBP	13.72	□□□□□ -0.21
SEC16A-208	ENST00000467838	PRAMEF27	A3QJZ7	478 aa		13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	ANKDD1B	A6NHY2	528 aa		13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	SLC30A4	O14863	429 aa		13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	TEX28	O15482	410 aa		13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	ELFN1	P0C7U0	828 aa		13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	ALAS2	P22557	587 aa		13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	MAP2K3	P46734	347 aa		13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	MANF	P55145	182 aa	Known RBP	13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	DMPK	Q09013	629 aa		13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	EFR3A	Q14156	821 aa		13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	GPR19	Q15760	415 aa		13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	MINDY4	Q4G0A6	757 aa		13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	SNAP47	Q5SQN1	464 aa		13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	KHDRBS2	Q5VWX1	349 aa	Known RBP	13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	TMEM215	Q68D42	235 aa		13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	UTS2B	Q765I0	119 aa		13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	KRT78	Q8N1N4	520 aa		13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	OR4K5	Q8NGD3	323 aa		13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	ENKUR	Q8TC29	256 aa		13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	AUTS2	Q8WXX7	1259 aa		13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	UFD1	Q92890	307 aa		13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	RAB8B	Q92930	207 aa		13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	COQ10A	Q96MF6	247 aa		13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	COQ7	Q99807	217 aa		13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	MS4A8	Q9BY19	250 aa		13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	ZCCHC2	Q9C0B9	1178 aa	Known RBP	13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	ACSS1	Q9NUB1	689 aa	Predicted RBP	13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	RBFOX1	Q9NWB1	397 aa	Known RBP	13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	P2RX2	Q9UBL9	471 aa		13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	SEC14L3	Q9UDX4	400 aa		13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	NDRG2	Q9UN36	371 aa	Known RBP	13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	YARS2	Q9Y2Z4	477 aa	Known RBP	13.71	□□□□□ -0.21
SEC16A-208	ENST00000467838	MKI67	P46013	3256 aa	Known RBP	13.71	□□□□□ -0.22
SEC16A-208	ENST00000467838	LRRK1	Q38SD2	2015 aa		13.71	□□□□□ -0.22
SEC16A-208	ENST00000467838	TRDV1	A0A1B0GX56	115 aa		13.71	□□□□□ -0.22
SEC16A-208	ENST00000467838	NEDD8-MDP1	E9PL57	170 aa		13.71	□□□□□ -0.22
SEC16A-208	ENST00000467838	LILRB3	O75022	631 aa		13.71	□□□□□ -0.22
SEC16A-208	ENST00000467838	ERG	P11308	486 aa		13.71	□□□□□ -0.22
SEC16A-208	ENST00000467838	GSTM3	P21266	225 aa		13.71	□□□□□ -0.22
SEC16A-208	ENST00000467838	VASP	P50552	380 aa	Predicted RBP	13.71	□□□□□ -0.22
SEC16A-208	ENST00000467838	SMS	P52788	366 aa		13.71	□□□□□ -0.22
SEC16A-208	ENST00000467838	MAPK12	P53778	367 aa		13.71	□□□□□ -0.22
SEC16A-208	ENST00000467838	UBE3A	Q05086	875 aa		13.71	□□□□□ -0.22
SEC16A-208	ENST00000467838	C19orf57	Q0VDD7	668 aa		13.71	□□□□□ -0.22
SEC16A-208	ENST00000467838	FOXD4	Q12950	439 aa	Predicted RBP	13.71	□□□□□ -0.22
SEC16A-208	ENST00000467838	TNK1	Q13470	666 aa		13.71	□□□□□ -0.22
SEC16A-208	ENST00000467838	PYDC2	Q56P42	97 aa		13.71	□□□□□ -0.22
SEC16A-208	ENST00000467838	ACSM5	Q6NUN0	579 aa		13.71	□□□□□ -0.22
SEC16A-208	ENST00000467838	CFAP206	Q8IYR0	622 aa		13.71	□□□□□ -0.22
SEC16A-208	ENST00000467838	LMNTD1	Q8N9Z9	388 aa		13.71	□□□□□ -0.22
SEC16A-208	ENST00000467838	VN1R2	Q8NFZ6	395 aa		13.71	□□□□□ -0.22
SEC16A-208	ENST00000467838	OR52P1P	Q8NH57	321 aa		13.71	□□□□□ -0.22
SEC16A-208	ENST00000467838	JPH3	Q8WXH2	748 aa	Predicted RBP	13.71	□□□□□ -0.22
SEC16A-208	ENST00000467838	PRRC1	Q96M27	445 aa		13.71	□□□□□ -0.22
SEC16A-208	ENST00000467838	SMG9	Q9H0W8	520 aa	Known RBP	13.71	□□□□□ -0.22
SEC16A-208	ENST00000467838	DPEP2	Q9H4A9	486 aa		13.71	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms