RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 CACNA1CQ13936 2221 aa16.1■□□□□ 0.17
COL7A1-206ENST00000466591 PKDREJQ9NTG1 2253 aa16.1■□□□□ 0.17
COL7A1-206ENST00000466591 SUPT7LO94864 414 aa16.1■□□□□ 0.17
COL7A1-206ENST00000466591 TOXO94900 526 aa16.1■□□□□ 0.17
COL7A1-206ENST00000466591 SNX4O95219 450 aa16.1■□□□□ 0.17
COL7A1-206ENST00000466591 KRT6AP02538 564 aa16.1■□□□□ 0.17
COL7A1-206ENST00000466591 KRT6BP04259 564 aa16.1■□□□□ 0.17
COL7A1-206ENST00000466591 RFPL3SP0C7P2 107 aa16.1■□□□□ 0.17
COL7A1-206ENST00000466591 CSNK2A2P19784 350 aaPredicted RBP16.1■□□□□ 0.17
COL7A1-206ENST00000466591 HMOX2P30519 316 aa16.1■□□□□ 0.17
COL7A1-206ENST00000466591 FEN1P39748 380 aaKnown RBP16.1■□□□□ 0.17
COL7A1-206ENST00000466591 KRT6CP48668 564 aa16.1■□□□□ 0.17
COL7A1-206ENST00000466591 CDH13P55290 713 aa16.1■□□□□ 0.17
COL7A1-206ENST00000466591 TRAF3Q13114 568 aa16.1■□□□□ 0.17
COL7A1-206ENST00000466591 NNATQ16517 81 aa16.1■□□□□ 0.17
COL7A1-206ENST00000466591 GGTA1PQ4G0N0 100 aa16.1■□□□□ 0.17
COL7A1-206ENST00000466591 UBAP2Q5T6F2 1119 aaKnown RBP16.1■□□□□ 0.17
COL7A1-206ENST00000466591 COMMD6Q7Z4G1 85 aa16.1■□□□□ 0.17
COL7A1-206ENST00000466591 PRR22Q8IZ63 422 aa16.1■□□□□ 0.17
COL7A1-206ENST00000466591 NOA1Q8NC60 698 aaKnown RBP16.1■□□□□ 0.17
COL7A1-206ENST00000466591 NEIL3Q8TAT5 605 aa16.1■□□□□ 0.17
COL7A1-206ENST00000466591 TRPC4APQ8TEL6 797 aa16.1■□□□□ 0.17
COL7A1-206ENST00000466591 UCN3Q969E3 161 aa16.1■□□□□ 0.17
COL7A1-206ENST00000466591 RILPQ96NA2 401 aa16.1■□□□□ 0.17
COL7A1-206ENST00000466591 SPRR3Q9UBC9 169 aa16.1■□□□□ 0.17
COL7A1-206ENST00000466591 DMGDHQ9UI17 866 aaKnown RBP16.1■□□□□ 0.17
COL7A1-206ENST00000466591 ZNF180Q9UJW8 692 aa16.1■□□□□ 0.17
COL7A1-206ENST00000466591 CAMK2AQ9UQM7 478 aa16.1■□□□□ 0.17
COL7A1-206ENST00000466591 ABCA12Q86UK0 2595 aa16.1■□□□□ 0.17
COL7A1-206ENST00000466591 A0A0G2JNJ9 132 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 GNG14A0A1W2PPG7 69 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 CCDC151A5D8V7 595 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 HSPB2A8KAH6 182 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 CDH16O75309 829 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 PDYNP01213 254 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 UQCRC1P31930 480 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 MAGEA12P43365 314 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 DUSP8Q13202 625 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 HSPB2Q16082 182 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 SLC25A35Q3KQZ1 300 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 LYPD8Q6UX82 237 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 RPS27LQ71UM5 84 aaKnown RBP16.09■□□□□ 0.17
COL7A1-206ENST00000466591 LRRC25Q8N386 305 aaPredicted RBP16.09■□□□□ 0.17
COL7A1-206ENST00000466591 METTL4Q8N3J2 472 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 ISL2Q96A47 359 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 MTBPQ96DY7 904 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 HBEGFQ99075 208 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 FUT8Q9BYC5 575 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 BRF2Q9HAW0 419 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 ZBTB26Q9HCK0 441 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 SH2D2AQ9NP31 389 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 ACKR4Q9NPB9 350 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 NPDC1Q9NQX5 325 aaPredicted RBP16.09■□□□□ 0.17
COL7A1-206ENST00000466591 FARSBQ9NSD9 589 aaKnown RBP16.09■□□□□ 0.17
COL7A1-206ENST00000466591 GIMAP4Q9NUV9 329 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 KLRF1Q9NZS2 232 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 SENP1Q9P0U3 644 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 Q9UFV3 132 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 KCNN3Q9UGI6 736 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 TRPS1Q9UHF7 1281 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 CNOT11Q9UKZ1 510 aaKnown RBP16.09■□□□□ 0.17
COL7A1-206ENST00000466591 NFU1Q9UMS0 254 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 PCDHA9Q9Y5H5 950 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 FAM215AQ9Y5M1 114 aa16.09■□□□□ 0.17
COL7A1-206ENST00000466591 A0A1W2PS29 197 aa16.08■□□□□ 0.16
COL7A1-206ENST00000466591 LRRC3CA6NJW4 275 aa16.08■□□□□ 0.16
COL7A1-206ENST00000466591 A8MT66 165 aa16.08■□□□□ 0.16
COL7A1-206ENST00000466591 DVL2O14641 736 aa16.08■□□□□ 0.16
COL7A1-206ENST00000466591 RPS17P08708 135 aaKnown RBP16.08■□□□□ 0.16
COL7A1-206ENST00000466591 KRT20P35900 424 aa16.08■□□□□ 0.16
COL7A1-206ENST00000466591 KRTAP10-9P60411 292 aa16.08■□□□□ 0.16
COL7A1-206ENST00000466591 CLCQ05315 142 aa16.08■□□□□ 0.16
COL7A1-206ENST00000466591 PLCXD2Q0VAA5 305 aa16.08■□□□□ 0.16
COL7A1-206ENST00000466591 RASA2Q15283 850 aa16.08■□□□□ 0.16
COL7A1-206ENST00000466591 FBXW10Q5XX13 1052 aa16.08■□□□□ 0.16
COL7A1-206ENST00000466591 SLC48A1Q6P1K1 146 aa16.08■□□□□ 0.16
COL7A1-206ENST00000466591 DMRTC2Q8IXT2 367 aaPredicted RBP16.08■□□□□ 0.16
COL7A1-206ENST00000466591 IFT20Q8IY31 132 aa16.08■□□□□ 0.16
COL7A1-206ENST00000466591 PM20D2Q8IYS1 436 aa16.08■□□□□ 0.16
COL7A1-206ENST00000466591 C1orf52Q8N6N3 182 aaKnown RBP16.08■□□□□ 0.16
COL7A1-206ENST00000466591 CDYL2Q8N8U2 506 aa16.08■□□□□ 0.16
COL7A1-206ENST00000466591 ADCY4Q8NFM4 1077 aa16.08■□□□□ 0.16
COL7A1-206ENST00000466591 SPPL2AQ8TCT8 520 aa16.08■□□□□ 0.16
COL7A1-206ENST00000466591 ZNF483Q8TF39 744 aaPredicted RBP16.08■□□□□ 0.16
COL7A1-206ENST00000466591 DCAKDQ8WVC6 231 aa16.08■□□□□ 0.16
COL7A1-206ENST00000466591 SECISBP2Q96T21 854 aaKnown RBP16.08■□□□□ 0.16
COL7A1-206ENST00000466591 VPS29Q9UBQ0 182 aa16.08■□□□□ 0.16
COL7A1-206ENST00000466591 PRODH2Q9UF12 536 aa16.08■□□□□ 0.16
COL7A1-206ENST00000466591 STK38LQ9Y2H1 464 aa16.08■□□□□ 0.16
COL7A1-206ENST00000466591 LRBAP50851 2863 aa16.08■□□□□ 0.16
COL7A1-206ENST00000466591 ANKRD33BA6NCL7 494 aa16.07■□□□□ 0.16
COL7A1-206ENST00000466591 KIF2AO00139 706 aaPredicted RBP16.07■□□□□ 0.16
COL7A1-206ENST00000466591 GNB5O14775 395 aa16.07■□□□□ 0.16
COL7A1-206ENST00000466591 CRCPO75575 148 aa16.07■□□□□ 0.16
COL7A1-206ENST00000466591 OR4F21O95013 312 aa16.07■□□□□ 0.16
COL7A1-206ENST00000466591 CT62P0C5K7 136 aa16.07■□□□□ 0.16
COL7A1-206ENST00000466591 ABCD3P28288 659 aa16.07■□□□□ 0.16
COL7A1-206ENST00000466591 FUT7Q11130 342 aa16.07■□□□□ 0.16
COL7A1-206ENST00000466591 RIPPLY2Q5TAB7 128 aa16.07■□□□□ 0.16
COL7A1-206ENST00000466591 BICRALQ6AI39 1079 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms