RNA–Protein interactions for RNA: ENST00000466538.1

CDC42BPA-211, Transcript of CDC42 binding protein kinase alpha, human

TSL 3

Gene CDC42BPA, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDC42BPA-211	ENST00000466538	ZNF749	O43361	778 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	STK17B	O94768	372 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	POP4	O95707	220 aa	Known RBP	3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	FOSL2	P15408	326 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	PRDX6	P30041	224 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	CHRNA3	P32297	505 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	CAMLG	P49069	296 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	VEGFC	P49767	419 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	PRELP	P51888	382 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	HERVK_113	P63132	956 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	ERVK-8	P63133	956 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	PDZK1IP1	Q13113	114 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	SCGB2A2	Q13296	93 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	ENPP2	Q13822	863 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	KARS	Q15046	597 aa	Known RBP	3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	DOK6	Q6PKX4	331 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	GSG1L	Q6UXU4	331 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	AMZ2	Q86W34	360 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	CATSPER3	Q86XQ3	398 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	PYROXD2	Q8N2H3	581 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	CCDC110	Q8TBZ0	833 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	FCGR1B	Q92637	280 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	TAF15	Q92804	592 aa	Known RBP eCLIP	3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	C16orf45	Q96MC5	204 aa	Predicted RBP	3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	CABLES2	Q9BTV7	478 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	ERVK-6	Q9BXR3	956 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	NLN	Q9BYT8	704 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	TRIM15	Q9C019	465 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	ELL3	Q9HB65	397 aa	Predicted RBP	3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	STARD5	Q9NSY2	213 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	GTSE1	Q9NYZ3	720 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	EIF3K	Q9UBQ5	218 aa	Known RBP	3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	ISY1	Q9ULR0	285 aa	Known RBP	3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	MGAT4A	Q9UM21	535 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	KLHDC2	Q9Y2U9	406 aa		3.58	□□□□□ -1.84
CDC42BPA-211	ENST00000466538		A0A0J9YWU9	116 aa		3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538		E9PQ18	207 aa		3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	EI24	O14681	340 aa		3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	DUSP11	O75319	330 aa	Known RBP	3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	NDUFA7	O95182	113 aa		3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	DES	P17661	470 aa		3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	FUT1	P19526	365 aa		3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	LMO2	P25791	158 aa		3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	CALML3	P27482	149 aa		3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	PTPN6	P29350	595 aa		3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	PPP2R1B	P30154	601 aa		3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	SPR	P35270	261 aa	Predicted RBP	3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	SLC1A4	P43007	532 aa		3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	SGSH	P51688	502 aa		3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	GSTO1	P78417	241 aa		3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	PARP6	Q2NL67	630 aa		3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	LRIT3	Q3SXY7	679 aa		3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	ZCCHC12	Q6PEW1	402 aa		3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	GPBP1	Q86WP2	473 aa		3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	ZNF440	Q8IYI8	595 aa		3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	BCORP1	Q8N888	145 aa		3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	ZNF397	Q8NF99	534 aa	Predicted RBP	3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	PINX1	Q96BK5	328 aa	Known RBP	3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	ZNF599	Q96NL3	588 aa		3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	TSPAN18	Q96SJ8	248 aa		3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	IWS1	Q96ST2	819 aa		3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	RBM4B	Q9BQ04	359 aa	Known RBP	3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	FICD	Q9BVA6	458 aa		3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	RPAP3	Q9H6T3	665 aa	Predicted RBP	3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	SEC14L4	Q9UDX3	406 aa		3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	EMCN	Q9ULC0	261 aa		3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	AKAP8L	Q9ULX6	646 aa	Known RBP eCLIP	3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	SLC9A8	Q9Y2E8	581 aa		3.57	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	SALL1	Q9NSC2	1324 aa		3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	RGSL1	A5PLK6	1076 aa		3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538		F8WDY8	70 aa		3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	LGALS8	O00214	317 aa		3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	CYB561D2	O14569	222 aa		3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	PTBP3	O95758	552 aa	Known RBP	3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	ECD	O95905	644 aa	Predicted RBP	3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	CCDC159	P0C7I6	412 aa		3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	SLC35G4	P0C7Q5	338 aa		3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	OXTR	P30559	389 aa		3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	PRDX2	P32119	198 aa		3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	PGF	P49763	221 aa		3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	FUT7	Q11130	342 aa		3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	FCN2	Q15485	313 aa		3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	CEBPE	Q15744	281 aa		3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	ANKRD55	Q3KP44	614 aa		3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	GLIPR1L2	Q4G1C9	344 aa		3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	HSP90AA5P	Q58FG0	334 aa		3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	TAF3	Q5VWG9	929 aa		3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	LIPK	Q5VXJ0	399 aa		3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	WDR25	Q64LD2	544 aa	Predicted RBP	3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	ATRAID	Q6UW56	229 aa		3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	ISLR2	Q6UXK2	745 aa		3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	PAQR9	Q6ZVX9	377 aa		3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	MOB2	Q70IA6	237 aa		3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	TMUB2	Q71RG4	321 aa		3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	LUZP1	Q86V48	1076 aa		3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	CCDC71	Q8IV32	467 aa	Predicted RBP	3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	CERS5	Q8N5B7	392 aa		3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	C4orf32	Q8N8J7	132 aa		3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	RELL2	Q8NC24	303 aa	Predicted RBP	3.56	□□□□□ -1.84
CDC42BPA-211	ENST00000466538	ZNRF1	Q8ND25	227 aa		3.56	□□□□□ -1.84

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