RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 RDH11Q8TC12 318 aa19.56■□□□□ 0.72
HMGB3-205ENST00000455596 BRINP2Q9C0B6 783 aa19.56■□□□□ 0.72
HMGB3-205ENST00000455596 CNIH4Q9P003 139 aa19.56■□□□□ 0.72
HMGB3-205ENST00000455596 ZNF780BQ9Y6R6 833 aa19.56■□□□□ 0.72
HMGB3-205ENST00000455596 NAV2Q8IVL1 2488 aa19.56■□□□□ 0.72
HMGB3-205ENST00000455596 GNG14A0A1W2PPG7 69 aa19.55■□□□□ 0.72
HMGB3-205ENST00000455596 SERTM1A2A2V5 107 aa19.55■□□□□ 0.72
HMGB3-205ENST00000455596 CAPN14A8MX76 684 aa19.55■□□□□ 0.72
HMGB3-205ENST00000455596 UBFD1O14562 309 aaKnown RBP19.55■□□□□ 0.72
HMGB3-205ENST00000455596 KRT4P19013 534 aa19.55■□□□□ 0.72
HMGB3-205ENST00000455596 MAGEA5P43359 124 aa19.55■□□□□ 0.72
HMGB3-205ENST00000455596 NAGLUP54802 743 aa19.55■□□□□ 0.72
HMGB3-205ENST00000455596 DNAJB13P59910 316 aa19.55■□□□□ 0.72
HMGB3-205ENST00000455596 KCNJ2P63252 427 aa19.55■□□□□ 0.72
HMGB3-205ENST00000455596 HMGCS1Q01581 520 aa19.55■□□□□ 0.72
HMGB3-205ENST00000455596 FOXO1Q12778 655 aa19.55■□□□□ 0.72
HMGB3-205ENST00000455596 MAP4K2Q12851 820 aa19.55■□□□□ 0.72
HMGB3-205ENST00000455596 NTRK2Q16620 822 aa19.55■□□□□ 0.72
HMGB3-205ENST00000455596 PRICKLE4Q2TBC4 344 aa19.55■□□□□ 0.72
HMGB3-205ENST00000455596 CFAP157Q5JU67 520 aa19.55■□□□□ 0.72
HMGB3-205ENST00000455596 PRAMEF20Q5VT98 475 aa19.55■□□□□ 0.72
HMGB3-205ENST00000455596 C3P1Q6ZMU1 363 aa19.55■□□□□ 0.72
HMGB3-205ENST00000455596 TMEM251Q8N6I4 163 aa19.55■□□□□ 0.72
HMGB3-205ENST00000455596 ADIPOR1Q96A54 375 aa19.55■□□□□ 0.72
HMGB3-205ENST00000455596 APIPQ96GX9 242 aa19.55■□□□□ 0.72
HMGB3-205ENST00000455596 DMRTA2Q96SC8 542 aa19.55■□□□□ 0.72
HMGB3-205ENST00000455596 UTS2RQ9UKP6 389 aa19.55■□□□□ 0.72
HMGB3-205ENST00000455596 DLGAP4Q9Y2H0 992 aa19.55■□□□□ 0.72
HMGB3-205ENST00000455596 CHCHD2Q9Y6H1 151 aaPredicted RBP19.55■□□□□ 0.72
HMGB3-205ENST00000455596 SEC23IPQ9Y6Y8 1000 aaKnown RBP19.55■□□□□ 0.72
HMGB3-205ENST00000455596 DRD2P14416 443 aa19.54■□□□□ 0.72
HMGB3-205ENST00000455596 CPA3P15088 417 aa19.54■□□□□ 0.72
HMGB3-205ENST00000455596 TMED10P49755 219 aaKnown RBP19.54■□□□□ 0.72
HMGB3-205ENST00000455596 FOXA1P55317 472 aa19.54■□□□□ 0.72
HMGB3-205ENST00000455596 NRG3P56975 720 aa19.54■□□□□ 0.72
HMGB3-205ENST00000455596 RAE1P78406 368 aaKnown RBP19.54■□□□□ 0.72
HMGB3-205ENST00000455596 BTKQ06187 659 aa19.54■□□□□ 0.72
HMGB3-205ENST00000455596 FAM111BQ6SJ93 734 aa19.54■□□□□ 0.72
HMGB3-205ENST00000455596 SCIMPQ6UWF3 145 aa19.54■□□□□ 0.72
HMGB3-205ENST00000455596 FRMD7Q6ZUT3 714 aa19.54■□□□□ 0.72
HMGB3-205ENST00000455596 NCCRP1Q6ZVX7 275 aaPredicted RBP19.54■□□□□ 0.72
HMGB3-205ENST00000455596 OR10G3Q8NGC4 313 aa19.54■□□□□ 0.72
HMGB3-205ENST00000455596 OR5M3Q8NGP4 307 aa19.54■□□□□ 0.72
HMGB3-205ENST00000455596 CNRIP1Q96F85 164 aaPredicted RBP19.54■□□□□ 0.72
HMGB3-205ENST00000455596 OXSMQ9NWU1 459 aa19.54■□□□□ 0.72
HMGB3-205ENST00000455596 MAT2BQ9NZL9 334 aa19.54■□□□□ 0.72
HMGB3-205ENST00000455596 HEY2Q9UBP5 337 aa19.54■□□□□ 0.72
HMGB3-205ENST00000455596 MID2Q9UJV3 735 aa19.54■□□□□ 0.72
HMGB3-205ENST00000455596 BOKQ9UMX3 212 aaPredicted RBP19.54■□□□□ 0.72
HMGB3-205ENST00000455596 CFL2Q9Y281 166 aa19.54■□□□□ 0.72
HMGB3-205ENST00000455596 NPFFR2Q9Y5X5 522 aa19.54■□□□□ 0.72
HMGB3-205ENST00000455596 CACNA1CQ13936 2221 aa19.53■□□□□ 0.72
HMGB3-205ENST00000455596 TLDC2A0PJX2 215 aa19.53■□□□□ 0.72
HMGB3-205ENST00000455596 ADAM10O14672 748 aa19.53■□□□□ 0.72
HMGB3-205ENST00000455596 TP53I11O14683 189 aa19.53■□□□□ 0.72
HMGB3-205ENST00000455596 HNRNPRO43390 633 aaKnown RBP19.53■□□□□ 0.72
HMGB3-205ENST00000455596 CRCPO75575 148 aa19.53■□□□□ 0.72
HMGB3-205ENST00000455596 IGHG3P01860 377 aa19.53■□□□□ 0.72
HMGB3-205ENST00000455596 IL3P08700 152 aa19.53■□□□□ 0.72
HMGB3-205ENST00000455596 S1PR1P21453 382 aa19.53■□□□□ 0.72
HMGB3-205ENST00000455596 HTR1EP28566 365 aa19.53■□□□□ 0.72
HMGB3-205ENST00000455596 GRNP28799 593 aaKnown RBP19.53■□□□□ 0.72
HMGB3-205ENST00000455596 TIA1P31483 386 aaKnown RBP eCLIP19.53■□□□□ 0.72
HMGB3-205ENST00000455596 SLC18A2Q05940 514 aa19.53■□□□□ 0.72
HMGB3-205ENST00000455596 HEPACAMQ14CZ8 416 aa19.53■□□□□ 0.72
HMGB3-205ENST00000455596 ZNF630Q2M218 657 aaPredicted RBP19.53■□□□□ 0.72
HMGB3-205ENST00000455596 TBCELQ5QJ74 424 aa19.53■□□□□ 0.72
HMGB3-205ENST00000455596 FAM180BQ6P0A1 224 aa19.53■□□□□ 0.72
HMGB3-205ENST00000455596 C4orf33Q8N1A6 199 aa19.53■□□□□ 0.72
HMGB3-205ENST00000455596 LRRC25Q8N386 305 aaPredicted RBP19.53■□□□□ 0.72
HMGB3-205ENST00000455596 C17orf47Q8NEP4 570 aa19.53■□□□□ 0.72
HMGB3-205ENST00000455596 ZNF681Q96N22 645 aa19.53■□□□□ 0.72
HMGB3-205ENST00000455596 TP63Q9H3D4 680 aaPredicted RBP19.53■□□□□ 0.72
HMGB3-205ENST00000455596 C12orf65Q9H3J6 166 aaKnown RBP19.53■□□□□ 0.72
HMGB3-205ENST00000455596 CHST11Q9NPF2 352 aa19.53■□□□□ 0.72
HMGB3-205ENST00000455596 PFDN4Q9NQP4 134 aa19.53■□□□□ 0.72
HMGB3-205ENST00000455596 BCAP29Q9UHQ4 241 aa19.53■□□□□ 0.72
HMGB3-205ENST00000455596 ZNF639Q9UID6 485 aa19.53■□□□□ 0.72
HMGB3-205ENST00000455596 CNOT11Q9UKZ1 510 aaKnown RBP19.53■□□□□ 0.72
HMGB3-205ENST00000455596 ARHGAP21Q5T5U3 1957 aa19.52■□□□□ 0.72
HMGB3-205ENST00000455596 ATP6AP2A0A1C7CYW4 349 aa19.52■□□□□ 0.72
HMGB3-205ENST00000455596 OR14I1A6ND48 311 aa19.52■□□□□ 0.72
HMGB3-205ENST00000455596 NPIPA2E9PIF3 369 aa19.52■□□□□ 0.72
HMGB3-205ENST00000455596 NPIPA3F8WFD2 350 aa19.52■□□□□ 0.72
HMGB3-205ENST00000455596 ATP6AP2O75787 350 aa19.52■□□□□ 0.72
HMGB3-205ENST00000455596 CLDN14O95500 239 aa19.52■□□□□ 0.72
HMGB3-205ENST00000455596 GPX3P22352 226 aa19.52■□□□□ 0.72
HMGB3-205ENST00000455596 GSTM5P46439 218 aa19.52■□□□□ 0.72
HMGB3-205ENST00000455596 VSNL1P62760 191 aa19.52■□□□□ 0.72
HMGB3-205ENST00000455596 DUSP2Q05923 314 aa19.52■□□□□ 0.72
HMGB3-205ENST00000455596 MGAT2Q10469 447 aa19.52■□□□□ 0.72
HMGB3-205ENST00000455596 SLC10A1Q14973 349 aa19.52■□□□□ 0.72
HMGB3-205ENST00000455596 EXOSC7Q15024 291 aaKnown RBP19.52■□□□□ 0.72
HMGB3-205ENST00000455596 RPS6KA2Q15349 733 aa19.52■□□□□ 0.72
HMGB3-205ENST00000455596 IMPG1Q17R60 797 aa19.52■□□□□ 0.72
HMGB3-205ENST00000455596 SPDYAQ5MJ70 313 aa19.52■□□□□ 0.72
HMGB3-205ENST00000455596 LIPMQ5VYY2 423 aa19.52■□□□□ 0.72
HMGB3-205ENST00000455596 TMEM211Q6ICI0 200 aa19.52■□□□□ 0.72
HMGB3-205ENST00000455596 GALNT18Q6P9A2 607 aa19.52■□□□□ 0.72
HMGB3-205ENST00000455596 TMEM64Q6YI46 380 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms