RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 TGIF1Q15583 401 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 ZNF628Q5EBL2 1059 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 FHL5Q5TD97 284 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 C6orf15Q6UXA7 325 aaPredicted RBP10.26□□□□□ -0.77
SCN9A-205ENST00000454569 QSOX2Q6ZRP7 698 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 WDR53Q7Z5U6 358 aaPredicted RBP10.26□□□□□ -0.77
SCN9A-205ENST00000454569 ARHGAP24Q8N264 748 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 LRRC25Q8N386 305 aaPredicted RBP10.26□□□□□ -0.77
SCN9A-205ENST00000454569 PSMA8Q8TAA3 256 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 CT55Q8WUE5 264 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 ELP4Q96EB1 424 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 FAM120BQ96EK7 910 aaKnown RBP10.26□□□□□ -0.77
SCN9A-205ENST00000454569 ZBED6CLQ96FA7 236 aaPredicted RBP10.26□□□□□ -0.77
SCN9A-205ENST00000454569 OTUB1Q96FW1 271 aaPredicted RBP10.26□□□□□ -0.77
SCN9A-205ENST00000454569 C16orf58Q96GQ5 468 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 SLC35A5Q9BS91 424 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 ASPSCR1Q9BZE9 553 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 SLC26A1Q9H2B4 701 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 ASCL3Q9NQ33 180 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 MAT2BQ9NZL9 334 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 KLK13Q9UKR3 277 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 ENTPD4Q9Y227 616 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 PCDHGA8Q9Y5G5 932 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 EML6Q6ZMW3 1958 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 GIMAP1-GIMAP5A0A087WTJ2 511 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 LOC101059948A0A1B0GTJ6 334 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 TCRBV16S1A1N1A0A5B0 115 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 CDRT15L2A8MXV6 281 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 IDSB3KWA1 339 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 CLIC1O00299 241 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 UPK1AO00322 258 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 CLDN4O14493 209 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 PRKNO60260 465 aaPredicted RBP10.26□□□□□ -0.77
SCN9A-205ENST00000454569 CLPSP04118 112 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 ATP1B1P05026 303 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 KLK3P07288 261 aaPredicted RBP10.26□□□□□ -0.77
SCN9A-205ENST00000454569 ZCCHC18P0CG32 403 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 SLC35E2P0CK97 266 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 AGXTP21549 392 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 NT5EP21589 574 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 NTSP30990 170 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 MPIP34949 423 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 SOAT1P35610 550 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 OCA2Q04671 838 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 SWI5Q1ZZU3 235 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.26□□□□□ -0.77
SCN9A-205ENST00000454569 CYB5D1Q6P9G0 228 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 PGM2L1Q6PCE3 622 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 HPS6Q86YV9 775 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 ENDOVQ8N8Q3 282 aaKnown RBP10.26□□□□□ -0.77
SCN9A-205ENST00000454569 PLPP5Q8NEB5 264 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 VPS37AQ8NEZ2 397 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 ADAMTS18Q8TE60 1221 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 PTPMT1Q8WUK0 201 aaPredicted RBP10.26□□□□□ -0.77
SCN9A-205ENST00000454569 C8orf44Q96CB5 159 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 CTHRC1Q96CG8 243 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 GIMAP5Q96F15 307 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 ZNF583Q96ND8 569 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 ZPBPQ9BS86 351 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 YIPF4Q9BSR8 244 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 CXorf21Q9HAI6 301 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 TPT1P8Q9HAU6 139 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 PNO1Q9NRX1 252 aaKnown RBP10.26□□□□□ -0.77
SCN9A-205ENST00000454569 GID8Q9NWU2 228 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 NDE1Q9NXR1 346 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 ADA2Q9NZK5 511 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 ABCD2Q9UBJ2 740 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.26□□□□□ -0.77
SCN9A-205ENST00000454569 CD300AQ9UGN4 299 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 VPS4AQ9UN37 437 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 WASF3Q9UPY6 502 aa10.26□□□□□ -0.77
SCN9A-205ENST00000454569 MRPS33Q9Y291 106 aaKnown RBP10.26□□□□□ -0.77
SCN9A-205ENST00000454569 MASP2O00187 686 aa10.25□□□□□ -0.77
SCN9A-205ENST00000454569 TERTO14746 1132 aaKnown RBP10.25□□□□□ -0.77
SCN9A-205ENST00000454569 NVLO15381 856 aaKnown RBP10.25□□□□□ -0.77
SCN9A-205ENST00000454569 CBX7O95931 251 aa10.25□□□□□ -0.77
SCN9A-205ENST00000454569 TCN1P20061 433 aaPredicted RBP10.25□□□□□ -0.77
SCN9A-205ENST00000454569 TCN2P20062 427 aa10.25□□□□□ -0.77
SCN9A-205ENST00000454569 UQCRC2P22695 453 aa10.25□□□□□ -0.77
SCN9A-205ENST00000454569 SSTR4P31391 388 aa10.25□□□□□ -0.77
SCN9A-205ENST00000454569 GPC1P35052 558 aa10.25□□□□□ -0.77
SCN9A-205ENST00000454569 PGM1P36871 562 aa10.25□□□□□ -0.77
SCN9A-205ENST00000454569 STT3AP46977 705 aa10.25□□□□□ -0.77
SCN9A-205ENST00000454569 CCT3P49368 545 aaKnown RBP10.25□□□□□ -0.77
SCN9A-205ENST00000454569 PRKAG1P54619 331 aa10.25□□□□□ -0.77
SCN9A-205ENST00000454569 OR4D2P58180 307 aa10.25□□□□□ -0.77
SCN9A-205ENST00000454569 MS4A2Q01362 244 aa10.25□□□□□ -0.77
SCN9A-205ENST00000454569 FOXC1Q12948 553 aa10.25□□□□□ -0.77
SCN9A-205ENST00000454569 NCF4Q15080 339 aa10.25□□□□□ -0.77
SCN9A-205ENST00000454569 NSDHLQ15738 373 aa10.25□□□□□ -0.77
SCN9A-205ENST00000454569 PIGGQ5H8A4 983 aa10.25□□□□□ -0.77
SCN9A-205ENST00000454569 SAXO2Q658L1 398 aa10.25□□□□□ -0.77
SCN9A-205ENST00000454569 C16orf89Q6UX73 402 aa10.25□□□□□ -0.77
SCN9A-205ENST00000454569 OLIG3Q7RTU3 272 aa10.25□□□□□ -0.77
SCN9A-205ENST00000454569 C6orf120Q7Z4R8 191 aa10.25□□□□□ -0.77
SCN9A-205ENST00000454569 C10orf67Q8IYJ2 551 aa10.25□□□□□ -0.77
SCN9A-205ENST00000454569 ST13P4Q8IZP2 240 aaPredicted RBP10.25□□□□□ -0.77
SCN9A-205ENST00000454569 GALNT15Q8N3T1 639 aa10.25□□□□□ -0.77
SCN9A-205ENST00000454569 OR10A6Q8NH74 314 aa10.25□□□□□ -0.77
SCN9A-205ENST00000454569 FBXO30Q8TB52 745 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms