RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 HIST2H2AA3Q6FI13 130 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 TCTN3Q6NUS6 607 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 RPTNQ6XPR3 784 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 HDDC2Q7Z4H3 204 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 VRK2Q86Y07 508 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 OR4K5Q8NGD3 323 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 OR51G2Q8NGK0 314 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 SMG7Q92540 1137 aaKnown RBP8.19□□□□□ -1.1
USP40-203ENST00000427112 SLC6A17Q9H1V8 727 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 OR51I1Q9H343 314 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 SP140LQ9H930 580 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 C1GALT1Q9NS00 363 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 CLCA2Q9UQC9 943 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 ANGPT4Q9Y264 503 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 ENPP4Q9Y6X5 453 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 DICER1Q9UPY3 1922 aaKnown RBP8.19□□□□□ -1.1
USP40-203ENST00000427112 ANKRD61A6NGH8 418 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 HEPACAM2A8MVW5 462 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 TMEM189-UBE2V1I3L0A0 370 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 PGRMC2O15173 223 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 TMPRSS11DO60235 418 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 LCMT2O60294 686 aaKnown RBP8.19□□□□□ -1.1
USP40-203ENST00000427112 PIP5K1CO60331 668 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 ALDH1A1P00352 501 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 H1F0P07305 194 aaKnown RBP8.19□□□□□ -1.1
USP40-203ENST00000427112 GKN3PP0CG01 181 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 ACVR1BP36896 505 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 MLLT3P42568 568 aaPredicted RBP8.19□□□□□ -1.1
USP40-203ENST00000427112 MAGEB1P43366 347 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 HTR3AP46098 478 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 NCBP2P52298 156 aaKnown RBP eCLIP8.19□□□□□ -1.1
USP40-203ENST00000427112 ZNF267Q14586 743 aaPredicted RBP8.19□□□□□ -1.1
USP40-203ENST00000427112 GXYLT1Q4G148 440 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 TRIQKQ629K1 86 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 MARCH9Q86YJ5 346 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 KLBQ86Z14 1044 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 ADGRF3Q8IZF5 1079 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 OR8J2Q8NGG1 315 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 GEMIN6Q8WXD5 167 aaKnown RBP8.19□□□□□ -1.1
USP40-203ENST00000427112 CNDP2Q96KP4 475 aaKnown RBP8.19□□□□□ -1.1
USP40-203ENST00000427112 SLC6A18Q96N87 628 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 CTRCQ99895 268 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 RBCK1Q9BYM8 510 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 DMRT3Q9NQL9 472 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 ZNF282Q9UDV7 671 aaPredicted RBP8.19□□□□□ -1.1
USP40-203ENST00000427112 ZNF222Q9UK12 451 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 GPR55Q9Y2T6 319 aaPredicted RBP8.19□□□□□ -1.1
USP40-203ENST00000427112 FAM240BA0A1B0GVZ2 78 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 SAGE2PA6NJ88 616 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 GFYI3L273 518 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 PDE9AO76083 593 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 ARHGEF15O94989 841 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 SLC2A2P11168 524 aaPredicted RBP8.19□□□□□ -1.1
USP40-203ENST00000427112 CPN2P22792 545 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 MYL9P24844 172 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 AHRP35869 848 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 SNRPNP63162 240 aaKnown RBP8.19□□□□□ -1.1
USP40-203ENST00000427112 ZMYND11Q15326 602 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 NNATQ16517 81 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 ODF4Q2M2E3 257 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 SPATS1Q496A3 300 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 ANXA8L1Q5VT79 327 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 TUBA3EQ6PEY2 450 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 ZSCAN2Q7Z7L9 614 aaPredicted RBP8.19□□□□□ -1.1
USP40-203ENST00000427112 ASCC1Q8N9N2 400 aaKnown RBP8.19□□□□□ -1.1
USP40-203ENST00000427112 KREMEN2Q8NCW0 462 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 C19orf18Q8NEA5 215 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 OR13C5Q8NGS8 318 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 SLC5A11Q8WWX8 675 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 KLHL6Q8WZ60 621 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 TM9SF4Q92544 642 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 FATE1Q969F0 183 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 NXPE3Q969Y0 559 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 NARS2Q96I59 477 aaKnown RBP8.19□□□□□ -1.1
USP40-203ENST00000427112 GPR174Q9BXC1 333 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 CCDC177Q9NQR7 707 aaPredicted RBP8.19□□□□□ -1.1
USP40-203ENST00000427112 ASAH2Q9NR71 780 aa8.19□□□□□ -1.1
USP40-203ENST00000427112 SPATA6Q9NWH7 488 aaPredicted RBP8.19□□□□□ -1.1
USP40-203ENST00000427112 OR2W5A6NFC9 320 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 A8MUA0 341 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 PLPP1O14494 284 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 C1orf105O95561 183 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 PAK4O96013 591 aaPredicted RBP8.18□□□□□ -1.1
USP40-203ENST00000427112 GNSP15586 552 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 MMP11P24347 488 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 CXCR2P25025 360 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 GRPRP30550 384 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 PCGF2P35227 344 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 HNMTP50135 292 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 RORCP51449 518 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 SLC3A1Q07837 685 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 MTAPQ13126 283 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 ZNF181Q2M3W8 571 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 BTBD16Q32M84 506 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 AKIRIN2Q53H80 203 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 C9orf64Q5T6V5 341 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 C18orf63Q68DL7 685 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 TMEM145Q8NBT3 493 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 FAM46DQ8NEK8 389 aa8.18□□□□□ -1.1
USP40-203ENST00000427112 OR6F1Q8NGZ6 308 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms