RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 SLC25A11Q02978 314 aaKnown RBP2.44□□□□□ -2.02
VPS41-206ENST00000418457 TRAP1Q12931 704 aaKnown RBP2.44□□□□□ -2.02
VPS41-206ENST00000418457 PPIL2Q13356 520 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 MSLNQ13421 630 aaPredicted RBP2.44□□□□□ -2.02
VPS41-206ENST00000418457 FLOT2Q14254 428 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 EFTUD2Q15029 972 aaKnown RBP eCLIP2.44□□□□□ -2.023e-6■■■□□ 18.3
VPS41-206ENST00000418457 PDK2Q15119 407 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 MAPRE2Q15555 327 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 CCDC14Q49A88 953 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 NADK2Q4G0N4 442 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 KCTD21Q4G0X4 260 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 FASTKD1Q53R41 847 aaKnown RBP2.44□□□□□ -2.02
VPS41-206ENST00000418457 SFT2D3Q587I9 215 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 TECRLQ5HYJ1 363 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 MDH1BQ5I0G3 518 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 WDR38Q5JTN6 314 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 C9orf152Q5JTZ5 239 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 GRTP1Q5TC63 336 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 FAM72AQ5TYM5 149 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 ANKRD22Q5VYY1 191 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 LPCAT4Q643R3 524 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 STEAP4Q687X5 459 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 SLC35E4Q6ICL7 350 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 FAM72DQ6L9T8 149 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 CDC42EP5Q6NZY7 148 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 TMEM270Q6UE05 265 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 MEX3BQ6ZN04 569 aaKnown RBP2.44□□□□□ -2.02
VPS41-206ENST00000418457 LINC00299Q6ZSB3 139 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 TMPRSS11FQ6ZWK6 438 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 USP43Q70EL4 1123 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 FRA10AC1Q70Z53 315 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 CCDC80Q76M96 950 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 ZNF410Q86VK4 478 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 FAM72BQ86X60 149 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 PLD3Q8IV08 490 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 WDR49Q8IV35 697 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 CDKL3Q8IVW4 592 aaPredicted RBP2.44□□□□□ -2.02
VPS41-206ENST00000418457 DEFB107AQ8IZN7 70 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 PGAM4Q8N0Y7 254 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 NDUFAF2Q8N183 169 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 CPSF7Q8N684 471 aaKnown RBP2.44□□□□□ -2.02
VPS41-206ENST00000418457 PACRGLQ8N7B6 248 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 TRIML2Q8N7C3 387 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 STPG4Q8N801 248 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 LSMEM1Q8N8F7 131 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 MINDY2Q8NBR6 621 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 SLC4A11Q8NBS3 891 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 DDHD1Q8NEL9 900 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 RDH11Q8TC12 318 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 ACTL9Q8TC94 416 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 PNPT1Q8TCS8 783 aaKnown RBP2.44□□□□□ -2.02
VPS41-206ENST00000418457 TRAF3IP1Q8TDR0 691 aaPredicted RBP2.44□□□□□ -2.02
VPS41-206ENST00000418457 RNF128Q8TEB7 428 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 PDCD6IPQ8WUM4 868 aaKnown RBP2.44□□□□□ -2.02
VPS41-206ENST00000418457 DEPDC1BQ8WUY9 529 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 PYDC1Q8WXC3 89 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 CCDC127Q96BQ5 260 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 FAF2Q96CS3 445 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 ASB9Q96DX5 294 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 DUS3LQ96G46 650 aaKnown RBP2.44□□□□□ -2.02
VPS41-206ENST00000418457 RMND5BQ96G75 393 aaPredicted RBP2.44□□□□□ -2.02
VPS41-206ENST00000418457 CDHR1Q96JP9 859 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 SGK494Q96LW2 274 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 MCEEQ96PE7 176 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 OLFM1Q99784 485 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 EBNA1BP2Q99848 306 aaKnown RBP2.44□□□□□ -2.02
VPS41-206ENST00000418457 DDX50Q9BQ39 737 aaKnown RBP2.44□□□□□ -2.02
VPS41-206ENST00000418457 PSD2Q9BQI7 771 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 FERMT1Q9BQL6 677 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 TCHPQ9BT92 498 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 LMF2Q9BU23 707 aaKnown RBP2.44□□□□□ -2.02
VPS41-206ENST00000418457 CENPOQ9BU64 300 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 TRAF4Q9BUZ4 470 aaPredicted RBP2.44□□□□□ -2.02
VPS41-206ENST00000418457 YTHDF1Q9BYJ9 559 aaKnown RBP2.44□□□□□ -2.02
VPS41-206ENST00000418457 SLC2A11Q9BYW1 496 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 SDCBP2Q9H190 292 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 OPA3Q9H6K4 179 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 TBC1D17Q9HA65 648 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 POPDC2Q9HBU9 364 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 MRM3Q9HC36 420 aaKnown RBP2.44□□□□□ -2.02
VPS41-206ENST00000418457 ACKR4Q9NPB9 350 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 EQTNQ9NQ60 294 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 ETNK2Q9NVF9 386 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 OSER1Q9NX31 292 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 RHBDL2Q9NX52 303 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 GIN1Q9NXP7 522 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 DPP3Q9NY33 737 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 UTP6Q9NYH9 597 aaKnown RBP2.44□□□□□ -2.02
VPS41-206ENST00000418457 TMOD2Q9NZR1 351 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 TMEM9Q9P0T7 183 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 WRAP73Q9P2S5 460 aaPredicted RBP2.44□□□□□ -2.02
VPS41-206ENST00000418457 ANAPC2Q9UJX6 822 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 ADAM28Q9UKQ2 775 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 ACAD8Q9UKU7 415 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 CDH7Q9ULB5 785 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 SLC7A7Q9UM01 511 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 CHMP2BQ9UQN3 213 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 AP4S1Q9Y587 144 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 NME7Q9Y5B8 376 aa2.44□□□□□ -2.02
VPS41-206ENST00000418457 FADS3Q9Y5Q0 445 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms