RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 SLC2A13Q96QE2 648 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 G6PC3Q9BUM1 346 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 C1orf109Q9NX04 203 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 TRAV17A0A0B4J275 112 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 A0A1W2PPW3 197 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 F10P00742 488 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 EPHA8P29322 1005 aaPredicted RBP6.96□□□□□ -1.3
SCN9A-202ENST00000409435 STARD6P59095 220 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 DYRK1AQ13627 763 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 MEP1AQ16819 746 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 GTF2H5Q6ZYL4 71 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 GPAT4Q86UL3 456 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 ALDH16A1Q8IZ83 802 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 OR2L5Q8NG80 312 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 AENQ8WTP8 325 aaKnown RBP6.96□□□□□ -1.3
SCN9A-202ENST00000409435 SCRN2Q96FV2 425 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 RBM4BQ9BQ04 359 aaKnown RBP6.96□□□□□ -1.3
SCN9A-202ENST00000409435 RBM4Q9BWF3 364 aaKnown RBP6.96□□□□□ -1.3
SCN9A-202ENST00000409435 KATNBL1Q9H079 304 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 ARMC1Q9NVT9 282 aa6.96□□□□□ -1.3
SCN9A-202ENST00000409435 IGHV1OR15-9A0A0B4J2B8 117 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 FAM90A27PA6NNH2 459 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 SULT1C2O00338 296 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 BCKDKO14874 412 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 STK17BO94768 372 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 MBP02144 154 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 MAGEB1P43366 347 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 RGS8P57771 180 aaPredicted RBP6.95□□□□□ -1.3
SCN9A-202ENST00000409435 TAS2R40P59535 323 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 FADDQ13158 208 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 CES4AQ5XG92 561 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 LPCAT4Q643R3 524 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 LINGO2Q7L985 606 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 PDZD9Q8IXQ8 264 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 NATD1Q8N6N6 113 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 C19orf47Q8N9M1 422 aaKnown RBP6.95□□□□□ -1.3
SCN9A-202ENST00000409435 FBXO25Q8TCJ0 367 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 LINC01599Q8WXQ3 324 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 KCNJ16Q9NPI9 418 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 OLAHQ9NV23 265 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 DMAC2Q9NW81 257 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 MYH13Q9UKX3 1938 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 FAM237BA0A1B0GVD1 139 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 OR52A4PA6NMU1 304 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 ZNF99A8MXY4 864 aaPredicted RBP6.95□□□□□ -1.3
SCN9A-202ENST00000409435 PDCD5O14737 125 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 GSC2O15499 205 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 IFNA1P01562 189 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 SERPINA6P08185 405 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 POU2F2P09086 479 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 ETV1P50549 477 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 KCNC3Q14003 757 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 ABRAXAS2Q15018 415 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 PON3Q15166 354 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 TMEM71Q6P5X7 295 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 ARCQ7LC44 396 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 ERMP1Q7Z2K6 904 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 UMODL1-AS1Q8N2C9 162 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 BCORP1Q8N888 145 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 ABHD5Q8WTS1 349 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 PHOX2BQ99453 314 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 MED18Q9BUE0 208 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 PBDC1Q9BVG4 233 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 PLEKHA1Q9HB21 404 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 SNX15Q9NRS6 342 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 SMPD3Q9NY59 655 aaPredicted RBP6.95□□□□□ -1.3
SCN9A-202ENST00000409435 ICKQ9UPZ9 632 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 ERVK-19Q9WJR5 959 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 C14orf166Q9Y224 244 aaKnown RBP6.95□□□□□ -1.3
SCN9A-202ENST00000409435 KCTD3Q9Y597 815 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 CCDC163A0A0D9SF12 145 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 DVL2O14641 736 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 SLC16A5O15375 505 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 SRPX2O60687 465 aaPredicted RBP6.95□□□□□ -1.3
SCN9A-202ENST00000409435 ZDHHC11BP0C7U3 371 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 SAGP10523 405 aaPredicted RBP6.95□□□□□ -1.3
SCN9A-202ENST00000409435 SLC6A2P23975 617 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 DCKP27707 260 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 ALDH3B1P43353 468 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 KCNC1P48547 511 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 NKAPLQ5M9Q1 402 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 AGTRAPQ6RW13 159 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 LIPIQ6XZB0 460 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 LAPTM4BQ86VI4 370 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 CREB3L4Q8TEY5 395 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 SLC47A1Q96FL8 570 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 KCNC2Q96PR1 638 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 ASB6Q9NWX5 421 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 MAGEL2Q9UJ55 1249 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 PPM1HQ9ULR3 514 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 TIAM2Q8IVF5 1701 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 ADAM10O14672 748 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 TPP1O14773 563 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 SLC34A2O95436 690 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 DBIP07108 87 aaKnown RBP6.95□□□□□ -1.3
SCN9A-202ENST00000409435 CERS1P27544 350 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 PRKAR1BP31321 381 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 GSCP56915 257 aaPredicted RBP6.95□□□□□ -1.3
SCN9A-202ENST00000409435 IL20RBQ6UXL0 311 aa6.95□□□□□ -1.3
SCN9A-202ENST00000409435 STK35Q8TDR2 534 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms