RNA–Protein interactions for RNA: ENST00000394633.7

PCDHA1-202, Transcript of protocadherin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene PCDHA1, Length 2,204 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-202ENST00000394633 ZNF547Q8IVP9 402 aa17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 FAM26EQ8N5C1 309 aa17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 CREB3L4Q8TEY5 395 aa17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 NELL2Q99435 816 aa17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 POLDIP3Q9BY77 421 aaKnown RBP17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 ZDHHC5Q9C0B5 715 aa17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 TDP1Q9NUW8 608 aa17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 PLEKHB1Q9UF11 243 aaPredicted RBP17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 PRAMEF27A3QJZ7 478 aa17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 SPINT1O43278 529 aa17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 NME6O75414 186 aaPredicted RBP17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 RAB36O95755 333 aa17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 CHRM5P08912 532 aaPredicted RBP17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 CPEP16870 476 aa17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 METAP1P53582 386 aa17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 RACK1P63244 317 aaKnown RBP17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 MRPS15P82914 257 aaKnown RBP17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 ALDH6A1Q02252 535 aaKnown RBP17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 SCN1BQ07699 218 aa17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 ASAH1Q13510 395 aa17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 NFE2L1Q14494 772 aa17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 SYT14P1Q58G82 188 aa17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 C22orf42Q6IC83 251 aa17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 PODNL1Q6PEZ8 512 aa17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 KRT78Q8N1N4 520 aa17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 SMPDL3AQ92484 453 aa17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 TMEM203Q969S6 136 aa17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 F2RL3Q96RI0 385 aa17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 NRTNQ99748 197 aa17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 AHSPQ9NZD4 102 aa17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 SEC14L3Q9UDX4 400 aa17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 TESQ9UGI8 421 aaKnown RBP17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 MRPS23Q9Y3D9 190 aaKnown RBP17.35■□□□□ 0.37
PCDHA1-202ENST00000394633 ANKRD34BA5PLL1 514 aa17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 CENPXA8MT69 81 aa17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 M0R3H8 397 aa17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 LINC01565O15544 149 aa17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 SLC28A2O43868 658 aa17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 TBX19O60806 448 aa17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 LGI1O95970 557 aa17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 CSF3P09919 207 aa17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 DDX5P17844 614 aaKnown RBP17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 CXCR2P25025 360 aa17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 BSGP35613 385 aa17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 NNMTP40261 264 aa17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 RPS5P46782 204 aaKnown RBP17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 PCBP4P57723 403 aaKnown RBP17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 CDK10Q15131 360 aa17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 SYPL1Q16563 259 aa17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 SPDYE7PQ495Y7 208 aa17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 ARHGAP15Q53QZ3 475 aa17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 ATAT1Q5SQI0 421 aa17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 THOC7Q6I9Y2 204 aaKnown RBP17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 LCTLQ6UWM7 567 aa17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 PRR23CQ6ZRP0 262 aa17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 PPP1R16AQ96I34 528 aa17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 LRRC3BQ96PB8 259 aa17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 SLC22A4Q9H015 551 aa17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 CARD8Q9Y2G2 431 aa17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 KLHL20Q9Y2M5 609 aa17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 YARS2Q9Y2Z4 477 aaKnown RBP17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 BOLA1Q9Y3E2 137 aa17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 TCF20Q9UGU0 1960 aaKnown RBP17.34■□□□□ 0.37
PCDHA1-202ENST00000394633 A0A1W2PQL4 384 aaPredicted RBP17.33■□□□□ 0.37
PCDHA1-202ENST00000394633 CACNB4O00305 520 aaPredicted RBP17.33■□□□□ 0.37
PCDHA1-202ENST00000394633 MMP11P24347 488 aa17.33■□□□□ 0.37
PCDHA1-202ENST00000394633 WEE1P30291 646 aa17.33■□□□□ 0.37
PCDHA1-202ENST00000394633 CNTN1Q12860 1018 aa17.33■□□□□ 0.37
PCDHA1-202ENST00000394633 GINS1Q14691 196 aa17.33■□□□□ 0.37
PCDHA1-202ENST00000394633 KHDRBS2Q5VWX1 349 aaKnown RBP17.33■□□□□ 0.37
PCDHA1-202ENST00000394633 ACSM5Q6NUN0 579 aa17.33■□□□□ 0.37
PCDHA1-202ENST00000394633 XKRXQ6PP77 449 aa17.33■□□□□ 0.37
PCDHA1-202ENST00000394633 FAM83HQ6ZRV2 1179 aaPredicted RBP17.33■□□□□ 0.37
PCDHA1-202ENST00000394633 CLDN22Q8N7P3 220 aa17.33■□□□□ 0.37
PCDHA1-202ENST00000394633 ASCC1Q8N9N2 400 aaKnown RBP17.33■□□□□ 0.37
PCDHA1-202ENST00000394633 ANKRD53Q8N9V6 530 aa17.33■□□□□ 0.37
PCDHA1-202ENST00000394633 FGF11Q92914 225 aa17.33■□□□□ 0.37
PCDHA1-202ENST00000394633 EXOSC8Q96B26 276 aaKnown RBP17.33■□□□□ 0.37
PCDHA1-202ENST00000394633 ZNF582Q96NG8 517 aaPredicted RBP17.33■□□□□ 0.37
PCDHA1-202ENST00000394633 ZNF607Q96SK3 696 aa17.33■□□□□ 0.37
PCDHA1-202ENST00000394633 TREX2Q9BQ50 279 aaPredicted RBP17.33■□□□□ 0.37
PCDHA1-202ENST00000394633 MS4A8Q9BY19 250 aa17.33■□□□□ 0.37
PCDHA1-202ENST00000394633 NEUROD4Q9HD90 331 aa17.33■□□□□ 0.37
PCDHA1-202ENST00000394633 SNX7Q9UNH6 387 aa17.33■□□□□ 0.37
PCDHA1-202ENST00000394633 POP7O75817 140 aaKnown RBP17.33■□□□□ 0.36
PCDHA1-202ENST00000394633 FGF19O95750 216 aa17.33■□□□□ 0.36
PCDHA1-202ENST00000394633 TRAPPC2P0DI81 140 aa17.33■□□□□ 0.36
PCDHA1-202ENST00000394633 TRAPPC2BP0DI82 140 aa17.33■□□□□ 0.36
PCDHA1-202ENST00000394633 FRKP42685 505 aaPredicted RBP17.33■□□□□ 0.36
PCDHA1-202ENST00000394633 GAS1P54826 345 aa17.33■□□□□ 0.36
PCDHA1-202ENST00000394633 SMIM11AP58511 58 aa17.33■□□□□ 0.36
PCDHA1-202ENST00000394633 LSM11P83369 360 aaKnown RBP eCLIP17.33■□□□□ 0.36
PCDHA1-202ENST00000394633 DAB2P98082 770 aa17.33■□□□□ 0.36
PCDHA1-202ENST00000394633 ZER1Q7Z7L7 766 aa17.33■□□□□ 0.36
PCDHA1-202ENST00000394633 GALNT12Q8IXK2 581 aa17.33■□□□□ 0.36
PCDHA1-202ENST00000394633 TDHQ8IZJ6 230 aa17.33■□□□□ 0.36
PCDHA1-202ENST00000394633 LRR1Q96L50 414 aa17.33■□□□□ 0.36
PCDHA1-202ENST00000394633 GPA33Q99795 319 aa17.33■□□□□ 0.36
PCDHA1-202ENST00000394633 ZCCHC2Q9C0B9 1178 aaKnown RBP17.33■□□□□ 0.36
PCDHA1-202ENST00000394633 C11orf54Q9H0W9 315 aaPredicted RBP17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms