RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 ERICH5Q6P6B1 374 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 MED25Q71SY5 747 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 GPR155Q7Z3F1 870 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 ZDHHC13Q8IUH4 622 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 EID3Q8N140 333 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 DHRSXQ8N5I4 330 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 METTL25Q8N6Q8 603 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 ZNF740Q8NDX6 193 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 KCNE4Q8WWG9 221 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 NKD1Q969G9 470 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 SDCCAG3Q96C92 435 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 PYURFQ96I23 114 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 FBXL20Q96IG2 436 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 GRIP2Q9C0E4 1043 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 SLC26A1Q9H2B4 701 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 OR51B5Q9H339 312 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 WDR54Q9H977 334 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 ANKHQ9HCJ1 492 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 NXT1Q9UKK6 140 aaKnown RBP9.6□□□□□ -0.87
VPS53-202ENST00000389040 UTS2RQ9UKP6 389 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 SAMD4AQ9UPU9 718 aaKnown RBP9.6□□□□□ -0.87
VPS53-202ENST00000389040 PCM1Q15154 2024 aa9.6□□□□□ -0.87
VPS53-202ENST00000389040 A0A087WV48 116 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 C9J4A7 227 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 G3V2T6 193 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 H0YAE9 185 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 SAP18O00422 153 aaKnown RBP9.59□□□□□ -0.87
VPS53-202ENST00000389040 GNGT2O14610 69 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 TGFB1P01137 390 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 NTRK1P04629 796 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 ALPLP05186 524 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 SMIM10L1P0DMW3 83 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 ZNF28P17035 718 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 ALOX12P18054 663 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 EFNA1P20827 205 aaPredicted RBP9.59□□□□□ -0.87
VPS53-202ENST00000389040 ALAS2P22557 587 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 EIF2S3P41091 472 aaKnown RBP9.59□□□□□ -0.87
VPS53-202ENST00000389040 NR1H2P55055 460 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 VMACQ2NL98 169 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 NADK2Q4G0N4 442 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 NKAIN1Q4KMZ8 207 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 CPZQ66K79 652 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 LRRC69Q6ZNQ3 347 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 TTLL10Q6ZVT0 673 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 STK32CQ86UX6 486 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 PLD3Q8IV08 490 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 ZZZ3Q8IYH5 903 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 ZCCHC7Q8N3Z6 543 aaKnown RBP9.59□□□□□ -0.87
VPS53-202ENST00000389040 SVOPLQ8N434 492 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 IL22RA1Q8N6P7 574 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 SLC38A9Q8NBW4 561 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 OR2L5Q8NG80 312 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.59□□□□□ -0.87
VPS53-202ENST00000389040 PMEPA1Q969W9 287 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 GAL3ST3Q96A11 431 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 SMIM10Q96HG1 83 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 KCNC2Q96PR1 638 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 SPATA9Q9BWV2 254 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 NPLQ9BXD5 320 aaPredicted RBP9.59□□□□□ -0.87
VPS53-202ENST00000389040 BHLHE41Q9C0J9 482 aaPredicted RBP9.59□□□□□ -0.87
VPS53-202ENST00000389040 REEP4Q9H6H4 257 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 TPT1P8Q9HAU6 139 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 AHSPQ9NZD4 102 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 ATP6V1HQ9UI12 483 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 CORO2BQ9UQ03 480 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 EXO1Q9UQ84 846 aaKnown RBP9.59□□□□□ -0.87
VPS53-202ENST00000389040 PADI2Q9Y2J8 665 aa9.59□□□□□ -0.87
VPS53-202ENST00000389040 C1orf226A1L170 272 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 SYNDIG1LA6NDD5 238 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 RNASET2O00584 256 aaKnown RBP9.58□□□□□ -0.88
VPS53-202ENST00000389040 SEMA3DO95025 777 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 PPIBP23284 216 aaKnown RBP9.58□□□□□ -0.88
VPS53-202ENST00000389040 RPL3P39023 403 aaKnown RBP9.58□□□□□ -0.88
VPS53-202ENST00000389040 PEX19P40855 299 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 RPS15P62841 145 aaKnown RBP9.58□□□□□ -0.88
VPS53-202ENST00000389040 ADARB1P78563 741 aaKnown RBP9.58□□□□□ -0.88
VPS53-202ENST00000389040 MC1RQ01726 317 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 VAC14Q08AM6 782 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 KCTD21Q4G0X4 260 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 LRRC23Q53EV4 343 aaPredicted RBP9.58□□□□□ -0.88
VPS53-202ENST00000389040 DEPDC1Q5TB30 811 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 BROXQ5VW32 411 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 TRIM40Q6P9F5 258 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 TTC33Q6PID6 262 aaPredicted RBP9.58□□□□□ -0.88
VPS53-202ENST00000389040 USP51Q70EK9 711 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 OVCH1Q7RTY7 1134 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 TIPARPQ7Z3E1 657 aaKnown RBP9.58□□□□□ -0.88
VPS53-202ENST00000389040 VN1R5Q7Z5H4 357 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 R3HCC1LQ7Z5L2 792 aaKnown RBP9.58□□□□□ -0.88
VPS53-202ENST00000389040 PATL1Q86TB9 770 aaKnown RBP9.58□□□□□ -0.88
VPS53-202ENST00000389040 PTOV1Q86YD1 416 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 CLEC4FQ8N1N0 589 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 ZNF786Q8N393 782 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 METTL4Q8N3J2 472 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 GALNT6Q8NCL4 622 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 OR4A15Q8NGL6 344 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 PNPT1Q8TCS8 783 aaKnown RBP9.58□□□□□ -0.88
VPS53-202ENST00000389040 ADAMTS18Q8TE60 1221 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 C10orf90Q96M02 699 aa9.58□□□□□ -0.88
VPS53-202ENST00000389040 TGIF2Q9GZN2 237 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms