RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 PTCHD4Q6ZW05 846 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 ADCK1Q86TW2 530 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 OR6T1Q8NGN1 323 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 ZHX1-C8orf76Q96EF9 292 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 ZNF764Q96H86 408 aaPredicted RBP12.62□□□□□ -0.39
CCDC3-202ENST00000378839 APOOQ9BUR5 198 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 ZCCHC3Q9NUD5 404 aaKnown RBP12.62□□□□□ -0.39
CCDC3-202ENST00000378839 TBC1D29Q9UFV1 150 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 CLEC2DQ9UHP7 191 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 PCDHGA3Q9Y5H0 932 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 A0A1W2PQF6 199 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 TMEM247A6NEH6 219 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 PDZK1P1A8MUH7 402 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 SH3BP5O60239 455 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 ZIC2O95409 532 aaPredicted RBP12.62□□□□□ -0.39
CCDC3-202ENST00000378839 HIST1H1TP22492 207 aaPredicted RBP12.62□□□□□ -0.39
CCDC3-202ENST00000378839 AK4P27144 223 aaPredicted RBP12.62□□□□□ -0.39
CCDC3-202ENST00000378839 RGS6P49758 472 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 RPS21P63220 83 aaKnown RBP12.62□□□□□ -0.39
CCDC3-202ENST00000378839 RELAQ04206 551 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 RGS21Q2M5E4 152 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 TMEM107Q6UX40 140 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 TAGAPQ8N103 731 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 DEPDC4Q8N2C3 294 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 STX19Q8N4C7 294 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 GANCQ8TET4 914 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 FAM131CQ96AQ9 280 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 SLC35G5Q96KT7 338 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 QRFPRQ96P65 431 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 MAPKAP1Q9BPZ7 522 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 ROGDIQ9GZN7 287 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 PITHD1Q9GZP4 211 aaPredicted RBP12.62□□□□□ -0.39
CCDC3-202ENST00000378839 SEMA3GQ9NS98 782 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 TRPC4Q9UBN4 977 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 SEC14L3Q9UDX4 400 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 GPR55Q9Y2T6 319 aaPredicted RBP12.62□□□□□ -0.39
CCDC3-202ENST00000378839 CHST2Q9Y4C5 530 aa12.62□□□□□ -0.39
CCDC3-202ENST00000378839 HMGN2P05204 90 aaKnown RBP12.61□□□□□ -0.39
CCDC3-202ENST00000378839 HSMCR30P0CW71 290 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 OSMP13725 252 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 TEAD1P28347 426 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 SERPINB1P30740 379 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 EIF2DP41214 584 aaKnown RBP12.61□□□□□ -0.39
CCDC3-202ENST00000378839 TEKQ02763 1124 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 OXA1LQ15070 435 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 SSX1Q16384 188 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 TMEM31Q5JXX7 168 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 PODNL1Q6PEZ8 512 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 ATCAYQ86WG3 371 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 YAF2Q8IY57 180 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 CLIP4Q8N3C7 705 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 TRMT61BQ9BVS5 477 aaKnown RBP12.61□□□□□ -0.39
CCDC3-202ENST00000378839 UCK2Q9BZX2 261 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 DSN1Q9H410 356 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 POLE4Q9NR33 117 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 DNAJC27Q9NZQ0 273 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 IFT52Q9Y366 437 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 TRIOO75962 3097 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 LOC100506127A0A0U1RQW1 187 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 GPR89AB7ZAQ6 455 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 ZW10O43264 779 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 OR10H3O60404 316 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 H1F0P07305 194 aaKnown RBP12.61□□□□□ -0.39
CCDC3-202ENST00000378839 GPR89BP0CG08 455 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 SGCGQ13326 291 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 LASP1Q14847 261 aaKnown RBP12.61□□□□□ -0.39
CCDC3-202ENST00000378839 TOR1AIP1Q5JTV8 583 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 ZER1Q7Z7L7 766 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 KCT2Q8NC54 265 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 FCGR1BQ92637 280 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 SLC35B4Q969S0 331 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 CDADC1Q9BWV3 514 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 SPEGQ15772 3267 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 TRBV23OR9-2A0A075B6M9 112 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 METTL15A6NJ78 407 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 FRS3O43559 492 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 GPC1P35052 558 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 CD97P48960 835 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 DLX2Q07687 328 aaPredicted RBP12.61□□□□□ -0.39
CCDC3-202ENST00000378839 ILKQ13418 452 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 LTB4RQ15722 352 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 ITPRIPL2Q3MIP1 535 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 DCST1Q5T197 706 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 ZNF776Q68DI1 518 aaPredicted RBP12.61□□□□□ -0.39
CCDC3-202ENST00000378839 OR4E2Q8NGC2 313 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 Q96MT0 163 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 CDCA4Q9BXL8 241 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 HMG20AQ9NP66 347 aa12.61□□□□□ -0.39
CCDC3-202ENST00000378839 TLR4O00206 839 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 ADAP00813 363 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 NR2F1P10589 423 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 CKMT1AP12532 417 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 LAMP2P13473 410 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 DRD2P14416 443 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 CDC42P60953 191 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 TRA2BP62995 288 aaKnown RBP12.6□□□□□ -0.39
CCDC3-202ENST00000378839 HYAL1Q12794 435 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 DNASE1L3Q13609 305 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 LRRC32Q14392 662 aa12.6□□□□□ -0.39
CCDC3-202ENST00000378839 SLC9A5Q14940 896 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms