RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 A0A1B0GV72 72 aa8.27□□□□□ -1.09
SYNE1-206ENST00000367253 SDC3O75056 442 aa8.27□□□□□ -1.09
SYNE1-206ENST00000367253 BCAS2O75934 225 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-206ENST00000367253 RETP07949 1114 aa8.27□□□□□ -1.09
SYNE1-206ENST00000367253 ACPPP15309 386 aa8.27□□□□□ -1.09
SYNE1-206ENST00000367253 CCNOP22674 350 aa8.27□□□□□ -1.09
SYNE1-206ENST00000367253 AQP4P55087 323 aa8.27□□□□□ -1.09
SYNE1-206ENST00000367253 LILRA4P59901 499 aa8.27□□□□□ -1.09
SYNE1-206ENST00000367253 RACK1P63244 317 aaKnown RBP8.27□□□□□ -1.09
SYNE1-206ENST00000367253 OGDHQ02218 1023 aa8.27□□□□□ -1.09
SYNE1-206ENST00000367253 DLX2Q07687 328 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-206ENST00000367253 TPRG1LQ5T0D9 272 aa8.27□□□□□ -1.09
SYNE1-206ENST00000367253 IDNKQ5T6J7 187 aa8.27□□□□□ -1.09
SYNE1-206ENST00000367253 TMEM225Q6GV28 225 aa8.27□□□□□ -1.09
SYNE1-206ENST00000367253 ZNF783Q6ZMS7 281 aa8.27□□□□□ -1.09
SYNE1-206ENST00000367253 RNF111Q6ZNA4 994 aa8.27□□□□□ -1.09
SYNE1-206ENST00000367253 WDR53Q7Z5U6 358 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-206ENST00000367253 KIAA0907Q7Z7F0 614 aaPredicted RBP8.27□□□□□ -1.09
SYNE1-206ENST00000367253 SYVN1Q86TM6 617 aa8.27□□□□□ -1.09
SYNE1-206ENST00000367253 ZNF565Q8N9K5 539 aa8.27□□□□□ -1.09
SYNE1-206ENST00000367253 ZNF610Q8N9Z0 462 aa8.27□□□□□ -1.09
SYNE1-206ENST00000367253 OR4E2Q8NGC2 313 aa8.27□□□□□ -1.09
SYNE1-206ENST00000367253 OR2D3Q8NGH3 330 aa8.27□□□□□ -1.09
SYNE1-206ENST00000367253 KIAA1191Q96A73 305 aa8.27□□□□□ -1.09
SYNE1-206ENST00000367253 SUCNR1Q9BXA5 334 aa8.27□□□□□ -1.09
SYNE1-206ENST00000367253 SLC17A9Q9BYT1 436 aa8.27□□□□□ -1.09
SYNE1-206ENST00000367253 RGCCQ9H4X1 137 aa8.27□□□□□ -1.09
SYNE1-206ENST00000367253 ACSS3Q9H6R3 686 aa8.27□□□□□ -1.09
SYNE1-206ENST00000367253 NANSQ9NR45 359 aa8.27□□□□□ -1.09
SYNE1-206ENST00000367253 NAALAD2Q9Y3Q0 740 aa8.27□□□□□ -1.09
SYNE1-206ENST00000367253 NUP188Q5SRE5 1749 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 TOGARAM1Q9Y4F4 1720 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 SLC22A2O15244 555 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 SLC25A17O43808 307 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 PDGFAP04085 211 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 ANXA2P07355 339 aaKnown RBP8.26□□□□□ -1.09
SYNE1-206ENST00000367253 C8BP07358 591 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 CD36P16671 472 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 TFEBP19484 476 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 SLC6A9P48067 706 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 TRAM1Q15629 374 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 ALG10Q5BKT4 473 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 FRRS1Q6ZNA5 592 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 MAML2Q8IZL2 1156 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-206ENST00000367253 ZNF611Q8N823 705 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 OR1J2Q8NGS2 313 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 CERS2Q96G23 380 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 ACTR6Q9GZN1 396 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 DHX33Q9H6R0 707 aaKnown RBP8.26□□□□□ -1.09
SYNE1-206ENST00000367253 CHST7Q9NS84 486 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 PCYOX1Q9UHG3 505 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 CICQ96RK0 1608 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-206ENST00000367253 PIGBOS1A0A0B4J2F0 54 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 MASP2O00187 686 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 SLC7A4O43246 635 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 POP7O75817 140 aaKnown RBP8.26□□□□□ -1.09
SYNE1-206ENST00000367253 FGF4P08620 206 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 PF4V1P10720 104 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 EPCAMP16422 314 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 XRCC1P18887 633 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-206ENST00000367253 CDK2P24941 298 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 MRPL19P49406 292 aaKnown RBP8.26□□□□□ -1.09
SYNE1-206ENST00000367253 LIMK2P53671 638 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 CXADRP78310 365 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 MRPS10P82664 201 aaKnown RBP8.26□□□□□ -1.09
SYNE1-206ENST00000367253 SLC25A52Q3SY17 297 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 LYRM7Q5U5X0 104 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 C22orf39Q6P5X5 142 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 SLC47A2Q86VL8 602 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 ZNF687Q8N1G0 1237 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 C9orf43Q8TAL5 461 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-206ENST00000367253 BRIX1Q8TDN6 353 aaKnown RBP8.26□□□□□ -1.09
SYNE1-206ENST00000367253 DIO2Q92813 273 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 MFSD3Q96ES6 412 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 ZBED6CLQ96FA7 236 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-206ENST00000367253 YTHDF1Q9BYJ9 559 aaKnown RBP8.26□□□□□ -1.09
SYNE1-206ENST00000367253 CEP41Q9BYV8 373 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 CRLF2Q9HC73 371 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 DUOX1Q9NRD9 1551 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 VIRMAQ69YN4 1812 aaKnown RBP8.26□□□□□ -1.09
SYNE1-206ENST00000367253 A0A0J9YYE9 177 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 ARGFXA6NJG6 315 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 TNFRSF11BO00300 401 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 FOXE1O00358 373 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-206ENST00000367253 CST5P28325 142 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-206ENST00000367253 FGFBP1Q14512 234 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 NADK2Q4G0N4 442 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 KHDC1Q4VXA5 237 aaKnown RBP8.26□□□□□ -1.09
SYNE1-206ENST00000367253 CES4AQ5XG92 561 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 TRABD2AQ86V40 505 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 DCUN1D3Q8IWE4 304 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 CPSF7Q8N684 471 aaKnown RBP8.26□□□□□ -1.09
SYNE1-206ENST00000367253 CNTD1Q8N815 330 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 MFSD8Q8NHS3 518 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 TFGQ92734 400 aaPredicted RBP8.26□□□□□ -1.09
SYNE1-206ENST00000367253 ZNF570Q96NI8 536 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 FUCA2Q9BTY2 467 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 LIN28AQ9H9Z2 209 aaKnown RBP8.26□□□□□ -1.09
SYNE1-206ENST00000367253 GPATCH2Q9NW75 528 aa8.26□□□□□ -1.09
SYNE1-206ENST00000367253 BTRCQ9Y297 605 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms