RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 NANOGP1Q8N7R0 232 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 PXYLP1Q8TE99 480 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 METTL2AQ96IZ6 378 aaKnown RBP11.48□□□□□ -0.57
CLIP3-201ENST00000360535 BBS4Q96RK4 519 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 RNF208Q9H0X6 261 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 TMEM39AQ9NV64 488 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 SLC23A2Q9UGH3 650 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 TRPM6Q9BX84 2022 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 A0A1W2PS29 197 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 CPSF4LA6NMK7 179 aaKnown RBP11.48□□□□□ -0.57
CLIP3-201ENST00000360535 ZNF670-ZNF695F2Z2N8 137 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 PCCBP05166 539 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 SSR2P43308 183 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 PXNP49023 591 aaPredicted RBP11.48□□□□□ -0.57
CLIP3-201ENST00000360535 DCDC1P59894 354 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 RHAGQ02094 409 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 NCF4Q15080 339 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 KHDRBS2Q5VWX1 349 aaKnown RBP11.48□□□□□ -0.57
CLIP3-201ENST00000360535 SLX4IPQ5VYV7 408 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 PDZD3Q86UT5 571 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 OR52P1PQ8NH57 321 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 ARSGQ96EG1 525 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 DTD2Q96FN9 168 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 ST6GAL2Q96JF0 529 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 SLC35G5Q96KT7 338 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 MRGPRX3Q96LB0 322 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 SGPP1Q9BX95 441 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 ZDHHC5Q9C0B5 715 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 SRRQ9GZT4 340 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 FBXW2Q9UKT8 454 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 HCN2Q9UL51 889 aa11.48□□□□□ -0.57
CLIP3-201ENST00000360535 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.47□□□□□ -0.57
CLIP3-201ENST00000360535 C2orf92A0A1B0GVN3 265 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 PRAMEF27A3QJZ7 478 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 GSAPA4D1B5 854 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 FAAHO00519 579 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 CAPN5O15484 640 aaPredicted RBP11.47□□□□□ -0.57
CLIP3-201ENST00000360535 HOXC11O43248 304 aaPredicted RBP11.47□□□□□ -0.57
CLIP3-201ENST00000360535 ATXN8OSP0DMR3 200 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 NR2F6P10588 404 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 LAG3P18627 525 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 GIPRP48546 466 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 INPP1P49441 399 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 NCBP2P52298 156 aaKnown RBP eCLIP11.47□□□□□ -0.57
CLIP3-201ENST00000360535 WDR5P61964 334 aaKnown RBP11.47□□□□□ -0.57
CLIP3-201ENST00000360535 KHDRBS1Q07666 443 aaKnown RBP eCLIP11.47□□□□□ -0.57
CLIP3-201ENST00000360535 GPR50Q13585 617 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 SYT14P1Q58G82 188 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 C12orf40Q86WS4 652 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 ASCC1Q8N9N2 400 aaKnown RBP11.47□□□□□ -0.57
CLIP3-201ENST00000360535 JPH3Q8WXH2 748 aaPredicted RBP11.47□□□□□ -0.57
CLIP3-201ENST00000360535 RAD51AP1Q96B01 352 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 MTERF3Q96E29 417 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 ZNF354BQ96LW1 612 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 TEFMQ96QE5 360 aaKnown RBP11.47□□□□□ -0.57
CLIP3-201ENST00000360535 TBX5Q99593 518 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 SERHL2Q9H4I8 314 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 SNX7Q9UNH6 387 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 NTNG1Q9Y2I2 539 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 VCANP13611 3396 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 NOTCH4Q99466 2003 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 OR6C70A6NIJ9 312 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 CPNE3O75131 537 aaKnown RBP11.47□□□□□ -0.57
CLIP3-201ENST00000360535 RHOP08100 348 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 CSF2RAP15509 400 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 WASP42768 502 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 AVPR1BP47901 424 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 MAN2A2P49641 1150 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 SNRPD2P62316 118 aaKnown RBP11.47□□□□□ -0.57
CLIP3-201ENST00000360535 IL18Q14116 193 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 OR5P2Q8WZ92 322 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 NEURL3Q96EH8 262 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 RNFT2Q96EX2 444 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 C16orf58Q96GQ5 468 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 LSM2Q9Y333 95 aaKnown RBP11.47□□□□□ -0.57
CLIP3-201ENST00000360535 A0A075B6Q4 140 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 HYKKA2RU49 373 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 ANKRD34BA5PLL1 514 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 SMLR1H3BR10 107 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 LCMT2O60294 686 aaKnown RBP11.47□□□□□ -0.57
CLIP3-201ENST00000360535 SOD1P00441 154 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 CSF3P09919 207 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 SDHBP21912 280 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 MYL9P24844 172 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 KCNJ5P48544 419 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 CCDC149Q6ZUS6 474 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 RASGRP3Q8IV61 690 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 OR4F15Q8NGB8 312 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 TM9SF4Q92544 642 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 COL26A1Q96A83 441 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 ZG16BQ96DA0 208 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 AIF1LQ9BQI0 150 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 ZCCHC2Q9C0B9 1178 aaKnown RBP11.47□□□□□ -0.57
CLIP3-201ENST00000360535 MIXL1Q9H2W2 232 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 C3orf14Q9HBI5 128 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 SLC13A4Q9UKG4 626 aa11.47□□□□□ -0.57
CLIP3-201ENST00000360535 TCF20Q9UGU0 1960 aaKnown RBP11.46□□□□□ -0.57
CLIP3-201ENST00000360535 CD8B2A6NJW9 211 aa11.46□□□□□ -0.57
CLIP3-201ENST00000360535 HPGDSO60760 199 aa11.46□□□□□ -0.57
CLIP3-201ENST00000360535 RAB36O95755 333 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms