RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 FUOMA2VDF0 154 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 EPOPA6NHQ4 379 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 ZW10O43264 779 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 AIFM1O95831 613 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 EPPINO95925 133 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 CHRM4P08173 479 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 LAMP2P13473 410 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 FEN1P39748 380 aaKnown RBP19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 LIMK1P53667 647 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 FUT5Q11128 374 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 C18orf63Q68DL7 685 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 PLAG1Q6DJT9 500 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 ANKHQ9HCJ1 492 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 IFT52Q9Y366 437 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 PCDHGA4Q9Y5G9 962 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 PCDHGA3Q9Y5H0 932 aa19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 SNRNP200O75643 2136 aaKnown RBP19.65■□□□□ 0.74
CCDC88B-203ENST00000359902 A0A1W2PS29 197 aa19.64■□□□□ 0.74
CCDC88B-203ENST00000359902 ZSCAN9O15535 394 aaPredicted RBP19.64■□□□□ 0.74
CCDC88B-203ENST00000359902 GUCY1B2O75343 617 aa19.64■□□□□ 0.74
CCDC88B-203ENST00000359902 ENTPD6O75354 484 aa19.64■□□□□ 0.74
CCDC88B-203ENST00000359902 DNTTP04053 509 aa19.64■□□□□ 0.74
CCDC88B-203ENST00000359902 HMGN2P05204 90 aaKnown RBP19.64■□□□□ 0.74
CCDC88B-203ENST00000359902 CERS1P27544 350 aa19.64■□□□□ 0.74
CCDC88B-203ENST00000359902 MAGEA8P43361 318 aa19.64■□□□□ 0.74
CCDC88B-203ENST00000359902 ARFIP1P53367 373 aa19.64■□□□□ 0.74
CCDC88B-203ENST00000359902 UGT2B15P54855 530 aa19.64■□□□□ 0.74
CCDC88B-203ENST00000359902 USP43Q70EL4 1123 aa19.64■□□□□ 0.74
CCDC88B-203ENST00000359902 ZNF367Q7RTV3 350 aa19.64■□□□□ 0.74
CCDC88B-203ENST00000359902 SNX29P2Q8IUI4 249 aa19.64■□□□□ 0.74
CCDC88B-203ENST00000359902 BBS10Q8TAM1 723 aa19.64■□□□□ 0.74
CCDC88B-203ENST00000359902 SFXN5Q8TD22 340 aa19.64■□□□□ 0.74
CCDC88B-203ENST00000359902 OR5M11Q96RB7 305 aa19.64■□□□□ 0.74
CCDC88B-203ENST00000359902 MROQ9BYG7 248 aa19.64■□□□□ 0.74
CCDC88B-203ENST00000359902 POLR2J3Q9H1A7 115 aaKnown RBP19.64■□□□□ 0.74
CCDC88B-203ENST00000359902 OR51E2Q9H255 320 aa19.64■□□□□ 0.74
CCDC88B-203ENST00000359902 DSN1Q9H410 356 aa19.64■□□□□ 0.74
CCDC88B-203ENST00000359902 APOBEC3BQ9UH17 382 aaKnown RBP19.64■□□□□ 0.74
CCDC88B-203ENST00000359902 A0A1W2PRQ8 180 aa19.64■□□□□ 0.73
CCDC88B-203ENST00000359902 KPNA4O00629 521 aaPredicted RBP19.64■□□□□ 0.73
CCDC88B-203ENST00000359902 UGT2B17O75795 530 aa19.64■□□□□ 0.73
CCDC88B-203ENST00000359902 HSMCR30P0CW71 290 aa19.64■□□□□ 0.73
CCDC88B-203ENST00000359902 C8orf89P0DMQ9 161 aa19.64■□□□□ 0.73
CCDC88B-203ENST00000359902 CMPK1P30085 196 aa19.64■□□□□ 0.73
CCDC88B-203ENST00000359902 NTSR1P30989 418 aa19.64■□□□□ 0.73
CCDC88B-203ENST00000359902 XKP51811 444 aa19.64■□□□□ 0.73
CCDC88B-203ENST00000359902 RAB8AP61006 207 aa19.64■□□□□ 0.73
CCDC88B-203ENST00000359902 OLR1P78380 273 aa19.64■□□□□ 0.73
CCDC88B-203ENST00000359902 TARDBPQ13148 414 aaKnown RBP eCLIP19.64■□□□□ 0.73
CCDC88B-203ENST00000359902 LASP1Q14847 261 aaKnown RBP19.64■□□□□ 0.73
CCDC88B-203ENST00000359902 OXA1LQ15070 435 aa19.64■□□□□ 0.73
CCDC88B-203ENST00000359902 C12orf73Q69YU5 71 aa19.64■□□□□ 0.73
CCDC88B-203ENST00000359902 ZNF425Q6IV72 752 aa19.64■□□□□ 0.73
CCDC88B-203ENST00000359902 ANKRD54Q6NXT1 300 aa19.64■□□□□ 0.73
CCDC88B-203ENST00000359902 PODNL1Q6PEZ8 512 aa19.64■□□□□ 0.73
CCDC88B-203ENST00000359902 HMGN2P46Q86SG4 172 aa19.64■□□□□ 0.73
CCDC88B-203ENST00000359902 MFSD9Q8NBP5 474 aa19.64■□□□□ 0.73
CCDC88B-203ENST00000359902 DACH2Q96NX9 599 aa19.64■□□□□ 0.73
CCDC88B-203ENST00000359902 KIR3DX1Q9H7L2 352 aa19.64■□□□□ 0.73
CCDC88B-203ENST00000359902 SLITRK5O94991 958 aa19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 TP53P04637 393 aaPredicted RBP19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 SHHQ15465 462 aa19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 SOWAHCQ53LP3 525 aaPredicted RBP19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 PERM1Q5SV97 790 aa19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 SLC48A1Q6P1K1 146 aa19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 BHLHB9Q6PI77 547 aa19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 TMEM184AQ6ZMB5 413 aa19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 C16orf58Q96GQ5 468 aa19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 MMP27Q9H306 513 aa19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 DAPK2Q9UIK4 370 aa19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 METTL15A6NJ78 407 aa19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 H3BN98 237 aa19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 EML2O95834 649 aa19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 LGI1O95970 557 aa19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 PIPP12273 146 aaPredicted RBP19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 TRIM16LQ309B1 348 aa19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 ZNF404Q494X3 552 aa19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 NIPAL1Q6NVV3 410 aa19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 TMEM107Q6UX40 140 aa19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 WDR53Q7Z5U6 358 aaPredicted RBP19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 OR6T1Q8NGN1 323 aa19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 GABRG3Q99928 467 aa19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 SPATA5L1Q9BVQ7 753 aa19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 RNF167Q9H6Y7 350 aa19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 TBC1D29Q9UFV1 150 aa19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 SNX7Q9UNH6 387 aa19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 KLK4Q9Y5K2 254 aa19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 HEBP2Q9Y5Z4 205 aa19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 KCNE3Q9Y6H6 103 aa19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 COLEC10Q9Y6Z7 277 aa19.63■□□□□ 0.73
CCDC88B-203ENST00000359902 LOC100506127A0A0U1RQW1 187 aa19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 PRSS38A1L453 326 aa19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 POM121BA6NF01 834 aa19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 ISM1B1AKI9 464 aa19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 PROM1O43490 865 aa19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 TPST2O60704 377 aa19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 F3P13726 295 aa19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 BCAP31P51572 246 aa19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 PPP2CBP62714 309 aa19.62■□□□□ 0.73
CCDC88B-203ENST00000359902 PPP2CAP67775 309 aa19.62■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms