RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 VPS29Q9UBQ0 182 aa6.57□□□□□ -1.36
VPS13A-201ENST00000355766 SLC23A2Q9UGH3 650 aa6.57□□□□□ -1.36
VPS13A-201ENST00000355766 LEF1Q9UJU2 399 aaPredicted RBP6.57□□□□□ -1.36
VPS13A-201ENST00000355766 ZNF490Q9ULM2 529 aaPredicted RBP6.57□□□□□ -1.36
VPS13A-201ENST00000355766 RUVBL1Q9Y265 456 aaKnown RBP6.57□□□□□ -1.36
VPS13A-201ENST00000355766 BTRCQ9Y297 605 aa6.57□□□□□ -1.36
VPS13A-201ENST00000355766 RNF11Q9Y3C5 154 aa6.57□□□□□ -1.36
VPS13A-201ENST00000355766 FIS1Q9Y3D6 152 aa6.57□□□□□ -1.36
VPS13A-201ENST00000355766 TIMM22Q9Y584 194 aa6.57□□□□□ -1.36
VPS13A-201ENST00000355766 KLK4Q9Y5K2 254 aa6.57□□□□□ -1.36
VPS13A-201ENST00000355766 GMEB1Q9Y692 573 aa6.57□□□□□ -1.36
VPS13A-201ENST00000355766 HIVEP3Q5T1R4 2406 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 A0A088AWK7 358 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 ANKUB1A6NFN9 424 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 E7EQ34 232 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 MRASO14807 208 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 PEX11AO75192 247 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 SCG5P05408 212 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 ANKRD34CP0C6C1 535 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 ZNF20P17024 532 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 ATF4P18848 351 aaPredicted RBP6.56□□□□□ -1.36
VPS13A-201ENST00000355766 AHRP35869 848 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 ACTR1BP42025 376 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 PPM1FP49593 454 aaPredicted RBP6.56□□□□□ -1.36
VPS13A-201ENST00000355766 HTR6P50406 440 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 CCR8P51685 355 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 POLR2JP52435 117 aaKnown RBP6.56□□□□□ -1.36
VPS13A-201ENST00000355766 DIO3P55073 304 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 CLDN8P56748 225 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 ACTR1AP61163 376 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 RPL38P63173 70 aaKnown RBP6.56□□□□□ -1.36
VPS13A-201ENST00000355766 TBL3Q12788 808 aaKnown RBP6.56□□□□□ -1.36
VPS13A-201ENST00000355766 TRAP1Q12931 704 aaKnown RBP6.56□□□□□ -1.36
VPS13A-201ENST00000355766 BNIP2Q12982 314 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 CHAF1BQ13112 559 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 DNASE1L3Q13609 305 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 KIR2DS3Q14952 304 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 SNCBQ16143 134 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 FXNQ16595 210 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 UGT8Q16880 541 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 PRSS53Q2L4Q9 553 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 C18orf21Q32NC0 220 aaPredicted RBP6.56□□□□□ -1.36
VPS13A-201ENST00000355766 MMEL1Q495T6 779 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 TMEM35AQ53FP2 167 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 AGKQ53H12 422 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 PIGGQ5H8A4 983 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 REP15Q6BDI9 236 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 RINLQ6ZS11 566 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 CHST15Q7LFX5 561 aaPredicted RBP6.56□□□□□ -1.36
VPS13A-201ENST00000355766 MYLK4Q86YV6 388 aaPredicted RBP6.56□□□□□ -1.36
VPS13A-201ENST00000355766 HPS6Q86YV9 775 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 TMEM126BQ8IUX1 230 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 FUNDC1Q8IVP5 155 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 DEFB107AQ8IZN7 70 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 DSELQ8IZU8 1212 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 FBXW8Q8N3Y1 598 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 OR7G3Q8NG95 312 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 OR8J3Q8NGG0 315 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 OR5AR1Q8NGP9 310 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 PROKR1Q8TCW9 393 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 THAP4Q8WY91 577 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 PNPLA2Q96AD5 504 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 ESAMQ96AP7 390 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 RCN3Q96D15 328 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 ASB9Q96DX5 294 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 MTERF3Q96E29 417 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 SPDL1Q96EA4 605 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 C12orf66Q96MD2 445 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 QRFPRQ96P65 431 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 SH3GL1Q99961 368 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 GPATCH1Q9BRR8 931 aaKnown RBP6.56□□□□□ -1.36
VPS13A-201ENST00000355766 CENPKQ9BS16 269 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 ATG10Q9H0Y0 220 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 DCLRE1BQ9H816 532 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 SLC52A3Q9NQ40 469 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 AHSPQ9NZD4 102 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 CCDC167Q9P0B6 97 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 SLC7A8Q9UHI5 535 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 ADAM29Q9UKF5 820 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 PRDM4Q9UKN5 801 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 AP1M2Q9Y6Q5 423 aa6.56□□□□□ -1.36
VPS13A-201ENST00000355766 RP1L1Q8IWN7 2480 aaPredicted RBP6.56□□□□□ -1.36
VPS13A-201ENST00000355766 MTORP42345 2549 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 MN1Q10571 1320 aaPredicted RBP6.55□□□□□ -1.36
VPS13A-201ENST00000355766 LOC100653049A0A140TA62 436 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 TRBC2A0A5B9 178 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 CCDC154A6NI56 674 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 ARGFXA6NJG6 315 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 PDZK1P1A8MUH7 402 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 C21orf140B9A014 251 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 AIM2O14862 343 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 TBX19O60806 448 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 FKBP6O75344 327 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 SEC22BO75396 215 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 ERN1O75460 977 aaKnown RBP6.55□□□□□ -1.36
VPS13A-201ENST00000355766 CEACAM4O75871 244 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 KRT34O76011 436 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 ATP6V1G2O95670 118 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 PDYNP01213 254 aa6.55□□□□□ -1.36
VPS13A-201ENST00000355766 G6PDP11413 515 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms