RNA–Protein interactions for RNA: ENST00000344824.10

TPM4-202, Transcript of tropomyosin 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene TPM4, Length 1,417 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4-202ENST00000344824 SPDL1Q96EA4 605 aa12.88□□□□□ -0.35
TPM4-202ENST00000344824 NSL1Q96IY1 281 aa12.88□□□□□ -0.35
TPM4-202ENST00000344824 REEP4Q9H6H4 257 aa12.88□□□□□ -0.35
TPM4-202ENST00000344824 MIEF1Q9NQG6 463 aa12.88□□□□□ -0.35
TPM4-202ENST00000344824 SH3BP4Q9P0V3 963 aa12.88□□□□□ -0.35
TPM4-202ENST00000344824 TEKT2Q9UIF3 430 aa12.88□□□□□ -0.35
TPM4-202ENST00000344824 DAPP1Q9UN19 280 aa12.88□□□□□ -0.35
TPM4-202ENST00000344824 VPS4AQ9UN37 437 aa12.88□□□□□ -0.35
TPM4-202ENST00000344824 ATG4BQ9Y4P1 393 aa12.88□□□□□ -0.35
TPM4-202ENST00000344824 MMACHCQ9Y4U1 282 aa12.88□□□□□ -0.35
TPM4-202ENST00000344824 ASB4Q9Y574 426 aa12.88□□□□□ -0.35
TPM4-202ENST00000344824 ZGRF1Q86YA3 2104 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 A0A1W2PR48 441 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 TCRBV16S1A1N1A0A5B0 115 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 CCDC154A6NI56 674 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 SAGE2PA6NJ88 616 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 GLOD5A6NK44 160 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 AIFM1O95831 613 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 IFNA16P05015 189 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 CAPN3P20807 821 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 EFNA1P20827 205 aaPredicted RBP12.87□□□□□ -0.35
TPM4-202ENST00000344824 S100A3P33764 101 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 UQCRFS1P47985 274 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 SLC26A5P58743 744 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 TRA2BP62995 288 aaKnown RBP12.87□□□□□ -0.35
TPM4-202ENST00000344824 MXRA7P84157 204 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 ID2Q02363 134 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 ZNF169Q14929 603 aaPredicted RBP12.87□□□□□ -0.35
TPM4-202ENST00000344824 MMEL1Q495T6 779 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 ZNF385BQ569K4 471 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 NDUFAF5Q5TEU4 345 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 MRM1Q6IN84 353 aaKnown RBP12.87□□□□□ -0.35
TPM4-202ENST00000344824 FAM180BQ6P0A1 224 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 BLOC1S3Q6QNY0 202 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 Q6ZS92 163 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 IKBIPQ70UQ0 350 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 ZNF771Q7L3S4 317 aaPredicted RBP12.87□□□□□ -0.35
TPM4-202ENST00000344824 RIMKLAQ8IXN7 391 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 KIF2BQ8N4N8 673 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 CISD2Q8N5K1 135 aaKnown RBP12.87□□□□□ -0.35
TPM4-202ENST00000344824 CATSPER1Q8NEC5 780 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 OR1N1Q8NGS0 311 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 PPCDCQ96CD2 204 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 RCN3Q96D15 328 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 CMTM5Q96DZ9 223 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 NPAS2Q99743 824 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 FAIM2Q9BWQ8 316 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 ABI3Q9P2A4 366 aa12.87□□□□□ -0.35
TPM4-202ENST00000344824 EXO1Q9UQ84 846 aaKnown RBP12.87□□□□□ -0.35
TPM4-202ENST00000344824 GABRR3A8MPY1 467 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 AIM2O14862 343 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 ANGPT2O15123 496 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 LDB3O75112 727 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 GUCY1B2O75343 617 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 WDPCPO95876 746 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 NR2F6P10588 404 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 PRDX6P30041 224 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 PPP2R1BP30154 601 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 STX4Q12846 297 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 RCAN2Q14206 197 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 HEPACAMQ14CZ8 416 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 TLR1Q15399 786 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 SPRED3Q2MJR0 410 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 CPTPQ5TA50 214 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 REP15Q6BDI9 236 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 OR4F3Q6IEY1 312 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 IGFL2Q6UWQ7 119 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 TICAM1Q8IUC6 712 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 SCUBE1Q8IWY4 988 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 ZNF595Q8IYB9 648 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 BEST3Q8N1M1 668 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 GLB1L3Q8NCI6 653 aaPredicted RBP12.86□□□□□ -0.35
TPM4-202ENST00000344824 RP9Q8TA86 221 aaKnown RBP12.86□□□□□ -0.35
TPM4-202ENST00000344824 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.86□□□□□ -0.356e-15■■■□□ 15.5
TPM4-202ENST00000344824 M1APQ8TC57 530 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 EXOSC8Q96B26 276 aaKnown RBP12.86□□□□□ -0.35
TPM4-202ENST00000344824 ASF1BQ9NVP2 202 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 ANKRD10Q9NXR5 420 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 PHF11Q9UIL8 331 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 PCDHGA10Q9Y5H3 936 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 DOPEY2Q9Y3R5 2298 aa12.86□□□□□ -0.35
TPM4-202ENST00000344824 IGKV3D-11A0A0A0MRZ8 115 aa12.85□□□□□ -0.35
TPM4-202ENST00000344824 WASHC1A8K0Z3 465 aa12.85□□□□□ -0.35
TPM4-202ENST00000344824 TGFBR3LH3BV60 316 aa12.85□□□□□ -0.35
TPM4-202ENST00000344824 PGRMC2O15173 223 aa12.85□□□□□ -0.35
TPM4-202ENST00000344824 PROM1O43490 865 aa12.85□□□□□ -0.35
TPM4-202ENST00000344824 T-ENOLP0DO92 83 aa12.85□□□□□ -0.35
TPM4-202ENST00000344824 LAMP1P11279 417 aa12.85□□□□□ -0.35
TPM4-202ENST00000344824 DDCP20711 480 aa12.85□□□□□ -0.35
TPM4-202ENST00000344824 GNLYP22749 145 aa12.85□□□□□ -0.35
TPM4-202ENST00000344824 BUD31P41223 144 aaPredicted RBP12.85□□□□□ -0.35
TPM4-202ENST00000344824 GSTM5P46439 218 aa12.85□□□□□ -0.35
TPM4-202ENST00000344824 HSD17B7P56937 341 aa12.85□□□□□ -0.35
TPM4-202ENST00000344824 TNFRSF17Q02223 184 aa12.85□□□□□ -0.35
TPM4-202ENST00000344824 BNIP1Q12981 228 aa12.85□□□□□ -0.35
TPM4-202ENST00000344824 PRSS53Q2L4Q9 553 aa12.85□□□□□ -0.35
TPM4-202ENST00000344824 SLC2A7Q6PXP3 512 aa12.85□□□□□ -0.35
TPM4-202ENST00000344824 R3HCC1LQ7Z5L2 792 aaKnown RBP12.85□□□□□ -0.35
TPM4-202ENST00000344824 ANKRD46Q86W74 232 aa12.85□□□□□ -0.35
TPM4-202ENST00000344824 SLC5A8Q8N695 610 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms