RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 HCFC1R1Q9NWW0 138 aa21.19■□□□□ 0.98
TRIM28-202ENST00000341753 WASHC1A8K0Z3 465 aa21.19■□□□□ 0.98
TRIM28-202ENST00000341753 LYRM1O43325 122 aa21.19■□□□□ 0.98
TRIM28-202ENST00000341753 PDE9AO76083 593 aa21.19■□□□□ 0.98
TRIM28-202ENST00000341753 C1QBP02746 253 aa21.19■□□□□ 0.98
TRIM28-202ENST00000341753 MYL12AP19105 171 aa21.19■□□□□ 0.98
TRIM28-202ENST00000341753 Q6ZVU0 165 aa21.19■□□□□ 0.98
TRIM28-202ENST00000341753 AMIGO1Q86WK6 493 aa21.19■□□□□ 0.98
TRIM28-202ENST00000341753 WACQ9BTA9 647 aa21.19■□□□□ 0.98
TRIM28-202ENST00000341753 SLAMF7Q9NQ25 335 aa21.19■□□□□ 0.98
TRIM28-202ENST00000341753 NDOR1Q9UHB4 597 aa21.19■□□□□ 0.98
TRIM28-202ENST00000341753 LSM7Q9UK45 103 aaKnown RBP21.19■□□□□ 0.98
TRIM28-202ENST00000341753 ISM1B1AKI9 464 aa21.18■□□□□ 0.98
TRIM28-202ENST00000341753 OLFM2O95897 454 aa21.18■□□□□ 0.98
TRIM28-202ENST00000341753 OR12D1P0DN82 309 aa21.18■□□□□ 0.98
TRIM28-202ENST00000341753 DDX5P17844 614 aaKnown RBP21.18■□□□□ 0.98
TRIM28-202ENST00000341753 HLA-FP30511 346 aa21.18■□□□□ 0.98
TRIM28-202ENST00000341753 WNT4P56705 351 aa21.18■□□□□ 0.98
TRIM28-202ENST00000341753 LRRC32Q14392 662 aa21.18■□□□□ 0.98
TRIM28-202ENST00000341753 ASTLQ6HA08 431 aaPredicted RBP21.18■□□□□ 0.98
TRIM28-202ENST00000341753 C22orf39Q6P5X5 142 aa21.18■□□□□ 0.98
TRIM28-202ENST00000341753 SZRD1Q7Z422 152 aa21.18■□□□□ 0.98
TRIM28-202ENST00000341753 MRPS31Q92665 395 aaKnown RBP21.18■□□□□ 0.98
TRIM28-202ENST00000341753 TMED9Q9BVK6 235 aa21.18■□□□□ 0.98
TRIM28-202ENST00000341753 SPG21Q9NZD8 308 aa21.18■□□□□ 0.98
TRIM28-202ENST00000341753 PIPSLA2A3N6 862 aa21.18■□□□□ 0.98
TRIM28-202ENST00000341753 ZNF197O14709 1029 aa21.18■□□□□ 0.98
TRIM28-202ENST00000341753 PLOD3O60568 738 aa21.18■□□□□ 0.98
TRIM28-202ENST00000341753 CTBP2P56545 445 aa21.18■□□□□ 0.98
TRIM28-202ENST00000341753 HSPB3Q12988 150 aa21.18■□□□□ 0.98
TRIM28-202ENST00000341753 PLK5Q496M5 336 aa21.18■□□□□ 0.98
TRIM28-202ENST00000341753 PODNL1Q6PEZ8 512 aa21.18■□□□□ 0.98
TRIM28-202ENST00000341753 PLCZ1Q86YW0 608 aa21.18■□□□□ 0.98
TRIM28-202ENST00000341753 RASGRP3Q8IV61 690 aa21.18■□□□□ 0.98
TRIM28-202ENST00000341753 CCDC28AQ8IWP9 274 aa21.18■□□□□ 0.98
TRIM28-202ENST00000341753 RASGEF1AQ8N9B8 481 aa21.18■□□□□ 0.98
TRIM28-202ENST00000341753 QRFPRQ96P65 431 aa21.18■□□□□ 0.98
TRIM28-202ENST00000341753 PPP1R3EQ9H7J1 279 aa21.18■□□□□ 0.98
TRIM28-202ENST00000341753 TBC1D17Q9HA65 648 aa21.18■□□□□ 0.98
TRIM28-202ENST00000341753 ING3Q9NXR8 418 aa21.18■□□□□ 0.98
TRIM28-202ENST00000341753 ANHXE9PGG2 379 aa21.17■□□□□ 0.98
TRIM28-202ENST00000341753 RTCAO00442 366 aaKnown RBP21.17■□□□□ 0.98
TRIM28-202ENST00000341753 FAAHO00519 579 aa21.17■□□□□ 0.98
TRIM28-202ENST00000341753 SLC30A4O14863 429 aa21.17■□□□□ 0.98
TRIM28-202ENST00000341753 PRKAR1AP10644 381 aa21.17■□□□□ 0.98
TRIM28-202ENST00000341753 POU3F3P20264 500 aaPredicted RBP21.17■□□□□ 0.98
TRIM28-202ENST00000341753 TNK1Q13470 666 aa21.17■□□□□ 0.98
TRIM28-202ENST00000341753 SNAPC1Q16533 368 aa21.17■□□□□ 0.98
TRIM28-202ENST00000341753 OCLNQ16625 522 aa21.17■□□□□ 0.98
TRIM28-202ENST00000341753 LHFPL3Q86UP9 236 aa21.17■□□□□ 0.98
TRIM28-202ENST00000341753 SLC9A6Q92581 669 aa21.17■□□□□ 0.98
TRIM28-202ENST00000341753 COQ7Q99807 217 aa21.17■□□□□ 0.98
TRIM28-202ENST00000341753 SF3B6Q9Y3B4 125 aaKnown RBP21.17■□□□□ 0.98
TRIM28-202ENST00000341753 NOS1APO75052 506 aaPredicted RBP21.17■□□□□ 0.98
TRIM28-202ENST00000341753 NR2F6P10588 404 aa21.17■□□□□ 0.98
TRIM28-202ENST00000341753 NPPBP16860 134 aa21.17■□□□□ 0.98
TRIM28-202ENST00000341753 INPP1P49441 399 aa21.17■□□□□ 0.98
TRIM28-202ENST00000341753 ZNF57Q68EA5 555 aaPredicted RBP21.17■□□□□ 0.98
TRIM28-202ENST00000341753 PDXPQ96GD0 296 aa21.17■□□□□ 0.98
TRIM28-202ENST00000341753 SENP5Q96HI0 755 aaPredicted RBP21.17■□□□□ 0.98
TRIM28-202ENST00000341753 SLC46A2Q9BY10 475 aa21.17■□□□□ 0.98
TRIM28-202ENST00000341753 TESQ9UGI8 421 aaKnown RBP21.17■□□□□ 0.98
TRIM28-202ENST00000341753 CKAP5Q14008 2032 aa21.16■□□□□ 0.98
TRIM28-202ENST00000341753 LOC105371267A0A1B0GV96 52 aa21.16■□□□□ 0.98
TRIM28-202ENST00000341753 SHISA3A0PJX4 238 aa21.16■□□□□ 0.98
TRIM28-202ENST00000341753 LALBAP00709 142 aa21.16■□□□□ 0.98
TRIM28-202ENST00000341753 EPHX1P07099 455 aa21.16■□□□□ 0.98
TRIM28-202ENST00000341753 ARSBP15848 533 aa21.16■□□□□ 0.98
TRIM28-202ENST00000341753 MMP11P24347 488 aa21.16■□□□□ 0.98
TRIM28-202ENST00000341753 CCR2P41597 374 aa21.16■□□□□ 0.98
TRIM28-202ENST00000341753 VEGFBP49765 207 aa21.16■□□□□ 0.98
TRIM28-202ENST00000341753 BNC1Q01954 994 aa21.16■□□□□ 0.98
TRIM28-202ENST00000341753 SDE2Q6IQ49 451 aa21.16■□□□□ 0.98
TRIM28-202ENST00000341753 MZT2BQ6NZ67 158 aa21.16■□□□□ 0.98
TRIM28-202ENST00000341753 IQCHQ86VS3 1027 aa21.16■□□□□ 0.98
TRIM28-202ENST00000341753 AP3S1Q92572 193 aa21.16■□□□□ 0.98
TRIM28-202ENST00000341753 RNFT2Q96EX2 444 aa21.16■□□□□ 0.98
TRIM28-202ENST00000341753 PLA2G12AQ9BZM1 189 aa21.16■□□□□ 0.98
TRIM28-202ENST00000341753 EGLN3Q9H6Z9 239 aa21.16■□□□□ 0.98
TRIM28-202ENST00000341753 MYNNQ9NPC7 610 aa21.16■□□□□ 0.98
TRIM28-202ENST00000341753 PAK6Q9NQU5 681 aaPredicted RBP21.16■□□□□ 0.98
TRIM28-202ENST00000341753 LEFTY2O00292 366 aa21.16■□□□□ 0.98
TRIM28-202ENST00000341753 CCL16O15467 120 aa21.16■□□□□ 0.98
TRIM28-202ENST00000341753 MAPK12P53778 367 aa21.16■□□□□ 0.98
TRIM28-202ENST00000341753 CNKSR3Q6P9H4 555 aa21.16■□□□□ 0.98
TRIM28-202ENST00000341753 QSOX2Q6ZRP7 698 aa21.16■□□□□ 0.98
TRIM28-202ENST00000341753 ZER1Q7Z7L7 766 aa21.16■□□□□ 0.98
TRIM28-202ENST00000341753 TMEM25Q86YD3 366 aa21.16■□□□□ 0.98
TRIM28-202ENST00000341753 TIGD4Q8IY51 512 aa21.16■□□□□ 0.98
TRIM28-202ENST00000341753 ANGPTL6Q8NI99 470 aa21.16■□□□□ 0.98
TRIM28-202ENST00000341753 ZNF689Q96CS4 500 aaPredicted RBP21.16■□□□□ 0.98
TRIM28-202ENST00000341753 B4GALT2O60909 372 aa21.15■□□□□ 0.98
TRIM28-202ENST00000341753 NTN1O95631 604 aa21.15■□□□□ 0.98
TRIM28-202ENST00000341753 CSF2RAP15509 400 aa21.15■□□□□ 0.98
TRIM28-202ENST00000341753 UQCRC2P22695 453 aa21.15■□□□□ 0.98
TRIM28-202ENST00000341753 RRAS2P62070 204 aaPredicted RBP21.15■□□□□ 0.98
TRIM28-202ENST00000341753 ABATP80404 500 aa21.15■□□□□ 0.98
TRIM28-202ENST00000341753 ALDH6A1Q02252 535 aaKnown RBP21.15■□□□□ 0.98
TRIM28-202ENST00000341753 TECPR1Q7Z6L1 1165 aa21.15■□□□□ 0.98
TRIM28-202ENST00000341753 SREK1IP1Q8N9Q2 155 aaPredicted RBP21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms