RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 COPS5Q92905 334 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 CCSER2Q9H7U1 834 aa5.03□□□□□ -1.6
SCN1A-201ENST00000303395 POLR3HQ9Y535 204 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-201ENST00000303395 A0A087WUU8 490 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 SERTM1A2A2V5 107 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 SOWAHBA6NEL2 793 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 ZNF670-ZNF695F2Z2N8 137 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 ALPLP05186 524 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 CXCL8P10145 99 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 BMP4P12644 408 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 UQCRFS1P47985 274 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 MTNR1AP48039 350 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 SEPHS1P49903 392 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 RNF144AP50876 292 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-201ENST00000303395 S100A10P60903 97 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 DSTNP60981 165 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 RPP30P78346 268 aaKnown RBP5.02□□□□□ -1.61
SCN1A-201ENST00000303395 CTXN3Q4LDR2 81 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 ZNF691Q5VV52 312 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 CXorf57Q6NSI4 855 aaKnown RBP5.02□□□□□ -1.61
SCN1A-201ENST00000303395 IGFN1Q86VF2 1251 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 TICAM1Q8IUC6 712 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 GNPDA2Q8TDQ7 276 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 FCAMRQ8WWV6 532 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 AUTS2Q8WXX7 1259 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 TRIB2Q92519 343 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 XYLT2Q9H1B5 865 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 SLC38A1Q9H2H9 487 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 TREM1Q9NP99 234 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 OARD1Q9Y530 152 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 WIF1Q9Y5W5 379 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 BACE2Q9Y5Z0 518 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 ATG2BQ96BY7 2078 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 CLIC1O00299 241 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 CDC7O00311 574 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 PIP5K1BO14986 540 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 KCNK5O95279 499 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 ADH1CP00326 375 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 ANXA4P09525 319 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-201ENST00000303395 ITGB5P18084 799 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 FKBP2P26885 142 aaKnown RBP5.02□□□□□ -1.61
SCN1A-201ENST00000303395 OXTRP30559 389 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 AVPR1BP47901 424 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 NANOGP8Q6NSW7 305 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 POMZP3Q6PJE2 187 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 B3GNT9Q6UX72 402 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 OR10G6Q8NH81 332 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 RAB7BQ96AH8 199 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 GABARAPL3Q9BY60 117 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 AKTIPQ9H8T0 292 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 NANOGQ9H9S0 305 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 MTPAPQ9NVV4 582 aaKnown RBP eCLIP5.02□□□□□ -1.61
SCN1A-201ENST00000303395 ZDHHC3Q9NYG2 299 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 ENPP4Q9Y6X5 453 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 LTBP3Q9NS15 1303 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 C13orf42A0A1B0GVH6 325 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 A8MXE2 369 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 INSIG1O15503 277 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 FFAR2O15552 330 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 GMDSO60547 372 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 APBB3O95704 486 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 POP4O95707 220 aaKnown RBP5.02□□□□□ -1.61
SCN1A-201ENST00000303395 HEXAP06865 529 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 RAC2P15153 192 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 CCR7P32248 378 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 MAP3K8P41279 467 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 GLP1RP43220 463 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 CCR10P46092 362 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 MANFP55145 182 aaKnown RBP5.02□□□□□ -1.61
SCN1A-201ENST00000303395 ADARB1P78563 741 aaKnown RBP5.02□□□□□ -1.61
SCN1A-201ENST00000303395 CLLU1Q5K131 121 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 DACT2Q5SW24 774 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 C12orf40Q86WS4 652 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 SLC41A1Q8IVJ1 513 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 OR2T33Q8NG76 320 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 ZC3HAV1LQ96H79 300 aaKnown RBP5.02□□□□□ -1.61
SCN1A-201ENST00000303395 GFM1Q96RP9 751 aaKnown RBP5.02□□□□□ -1.61
SCN1A-201ENST00000303395 SEMA3CQ99985 751 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 REEP4Q9H6H4 257 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 MKKSQ9NPJ1 570 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-201ENST00000303395 STARD7Q9NQZ5 370 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 PLEKHM1Q9Y4G2 1056 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 OR6C70A6NIJ9 312 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 NPIPB8E9PQR5 432 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 OR2F2O95006 317 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 SPATA31D3P0C874 917 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 CYP4B1P13584 511 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 OSMP13725 252 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 MAOAP21397 527 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 AGXTP21549 392 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 VAMP1P23763 118 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 GRK6P43250 576 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 E2F1Q01094 437 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 EFEMP1Q12805 493 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 OR2F1Q13607 317 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 GK2Q14410 553 aaPredicted RBP5.02□□□□□ -1.61
SCN1A-201ENST00000303395 DUSP7Q16829 419 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 SEZ6L2Q6UXD5 910 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 SPATA31D4Q6ZUB0 917 aa5.02□□□□□ -1.61
SCN1A-201ENST00000303395 FAM124AQ86V42 546 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms