RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 IRAK1BP1Q5VVH5 260 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 PSMA8Q8TAA3 256 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 ADI1Q9BV57 179 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 RAB26Q9ULW5 256 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 ANGPT4Q9Y264 503 aa15.48■□□□□ 0.07
USP4-201ENST00000265560 TGFBR3LH3BV60 316 aa15.47■□□□□ 0.07
USP4-201ENST00000265560 CYP4B1P13584 511 aa15.47■□□□□ 0.07
USP4-201ENST00000265560 MAOAP21397 527 aa15.47■□□□□ 0.07
USP4-201ENST00000265560 GSTM5P46439 218 aa15.47■□□□□ 0.07
USP4-201ENST00000265560 GTF2A1P52655 376 aaPredicted RBP15.47■□□□□ 0.07
USP4-201ENST00000265560 C1orf189Q5VU69 101 aa15.47■□□□□ 0.07
USP4-201ENST00000265560 TMEM151BQ8IW70 566 aa15.47■□□□□ 0.07
USP4-201ENST00000265560 ARHGEF39Q8N4T4 335 aa15.47■□□□□ 0.07
USP4-201ENST00000265560 ROGDIQ9GZN7 287 aa15.47■□□□□ 0.07
USP4-201ENST00000265560 EXD2Q9NVH0 621 aa15.47■□□□□ 0.07
USP4-201ENST00000265560 CCDC163A0A0D9SF12 145 aa15.47■□□□□ 0.07
USP4-201ENST00000265560 FCMRO60667 390 aa15.47■□□□□ 0.07
USP4-201ENST00000265560 SMNDC1O75940 238 aaKnown RBP eCLIP15.47■□□□□ 0.07
USP4-201ENST00000265560 OR2B3O76000 313 aa15.47■□□□□ 0.07
USP4-201ENST00000265560 FHP07954 510 aa15.47■□□□□ 0.07
USP4-201ENST00000265560 CHRM4P08173 479 aa15.47■□□□□ 0.07
USP4-201ENST00000265560 PORP16435 677 aaPredicted RBP15.47■□□□□ 0.07
USP4-201ENST00000265560 RRM2P31350 389 aa15.47■□□□□ 0.07
USP4-201ENST00000265560 GABRA4P48169 554 aa15.47■□□□□ 0.07
USP4-201ENST00000265560 PCBP3P57721 371 aaKnown RBP15.47■□□□□ 0.07
USP4-201ENST00000265560 UGT2A3Q6UWM9 527 aa15.47■□□□□ 0.07
USP4-201ENST00000265560 MAMSTRQ6ZN01 415 aa15.47■□□□□ 0.07
USP4-201ENST00000265560 SAP25Q8TEE9 199 aa15.47■□□□□ 0.07
USP4-201ENST00000265560 OR7D2Q96RA2 312 aa15.47■□□□□ 0.07
USP4-201ENST00000265560 MAGIXQ9H6Y5 334 aa15.47■□□□□ 0.07
USP4-201ENST00000265560 NDUFAF4Q9P032 175 aa15.47■□□□□ 0.07
USP4-201ENST00000265560 PLCL2Q9UPR0 1127 aa15.47■□□□□ 0.07
USP4-201ENST00000265560 GMEB1Q9Y692 573 aa15.47■□□□□ 0.07
USP4-201ENST00000265560 RIF1Q5UIP0 2472 aaKnown RBP15.47■□□□□ 0.07
USP4-201ENST00000265560 FRS3O43559 492 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 DUX1O43812 170 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 TPST2O60704 377 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 ALPLP05186 524 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 DDX5P17844 614 aaKnown RBP15.46■□□□□ 0.07
USP4-201ENST00000265560 MERTKQ12866 999 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 SIM2Q14190 667 aaPredicted RBP15.46■□□□□ 0.07
USP4-201ENST00000265560 PUM1Q14671 1186 aaKnown RBP eCLIP15.46■□□□□ 0.07
USP4-201ENST00000265560 MLC1Q15049 377 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 IQCCQ4KMZ1 466 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 ERVMER34-1Q9H9K5 563 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 SMPD3Q9NY59 655 aaPredicted RBP15.46■□□□□ 0.07
USP4-201ENST00000265560 CNOT11Q9UKZ1 510 aaKnown RBP15.46■□□□□ 0.07
USP4-201ENST00000265560 ASPMQ8IZT6 3477 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 CUL9Q8IWT3 2517 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 EMC8O43402 210 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 DENRO43583 198 aaKnown RBP15.46■□□□□ 0.07
USP4-201ENST00000265560 GDF9O60383 454 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 HOXA6P31267 233 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 CLCN2P51788 898 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 ARFIP1P53367 373 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 PRR5P85299 388 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 MYBPC1Q00872 1141 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 RBBP4Q09028 425 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 MYBPC3Q14896 1274 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 CMPK2Q5EBM0 449 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 NATD1Q8N6N6 113 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 DTWD2Q8NBA8 298 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 GPR32P1Q8NGA4 272 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 TFAP2CQ92754 450 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 ANKRD9Q96BM1 317 aaPredicted RBP15.46■□□□□ 0.07
USP4-201ENST00000265560 SDCCAG3Q96C92 435 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 SPATA9Q9BWV2 254 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 AMBRA1Q9C0C7 1298 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 RAD21L1Q9H4I0 556 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 C3orf14Q9HBI5 128 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 PDP1Q9P0J1 537 aaPredicted RBP15.46■□□□□ 0.07
USP4-201ENST00000265560 MKLN1Q9UL63 735 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 SPACA6W5XKT8 324 aa15.46■□□□□ 0.07
USP4-201ENST00000265560 A0A1B0GTQ1 180 aa15.46■□□□□ 0.06
USP4-201ENST00000265560 SRPX2O60687 465 aaPredicted RBP15.46■□□□□ 0.06
USP4-201ENST00000265560 H6PDO95479 791 aa15.46■□□□□ 0.06
USP4-201ENST00000265560 GPR75O95800 540 aa15.46■□□□□ 0.06
USP4-201ENST00000265560 RECKO95980 971 aa15.46■□□□□ 0.06
USP4-201ENST00000265560 SEMG1P04279 462 aa15.46■□□□□ 0.06
USP4-201ENST00000265560 MAGEA2P43356 314 aa15.46■□□□□ 0.06
USP4-201ENST00000265560 GSSP48637 474 aa15.46■□□□□ 0.06
USP4-201ENST00000265560 RELAQ04206 551 aa15.46■□□□□ 0.06
USP4-201ENST00000265560 DAG1Q14118 895 aa15.46■□□□□ 0.06
USP4-201ENST00000265560 MFSD4BQ5TF39 518 aa15.46■□□□□ 0.06
USP4-201ENST00000265560 ZNF574Q6ZN55 896 aaPredicted RBP15.46■□□□□ 0.06
USP4-201ENST00000265560 LACC1Q8IV20 430 aa15.46■□□□□ 0.06
USP4-201ENST00000265560 CDS1Q92903 461 aa15.46■□□□□ 0.06
USP4-201ENST00000265560 CLIP3Q96DZ5 547 aa15.46■□□□□ 0.06
USP4-201ENST00000265560 PHOX2BQ99453 314 aa15.46■□□□□ 0.06
USP4-201ENST00000265560 OSBPL11Q9BXB4 747 aa15.46■□□□□ 0.06
USP4-201ENST00000265560 UCK1Q9HA47 277 aa15.46■□□□□ 0.06
USP4-201ENST00000265560 MS4A12Q9NXJ0 267 aa15.46■□□□□ 0.06
USP4-201ENST00000265560 AASSQ9UDR5 926 aa15.46■□□□□ 0.06
USP4-201ENST00000265560 GIMAP1-GIMAP5A0A087WTJ2 511 aa15.45■□□□□ 0.06
USP4-201ENST00000265560 PIGAP37287 484 aa15.45■□□□□ 0.06
USP4-201ENST00000265560 CDH12P55289 794 aa15.45■□□□□ 0.06
USP4-201ENST00000265560 CYP4Z1Q86W10 505 aa15.45■□□□□ 0.06
USP4-201ENST00000265560 CHERPQ8IWX8 916 aaKnown RBP15.45■□□□□ 0.06
USP4-201ENST00000265560 OR4D11Q8NGI4 311 aa15.45■□□□□ 0.06
USP4-201ENST00000265560 OR1L3Q8NH93 324 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms