RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 TREX2Q9BQ50 279 aaPredicted RBP11.98□□□□□ -0.49
LIG1-201ENST00000263274 AIF1LQ9BQI0 150 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 CNIH4Q9P003 139 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 OR6C70A6NIJ9 312 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 NPIPB8E9PQR5 432 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 NCR1O76036 304 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 PCDH8O95206 1070 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 PCCBP05166 539 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 LAG3P18627 525 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 ETV5P41161 510 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 ETV1P50549 477 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 NCBP2P52298 156 aaKnown RBP eCLIP11.98□□□□□ -0.49
LIG1-201ENST00000263274 TAS2R41P59536 307 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 GNG2P59768 71 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 ARHGAP15Q53QZ3 475 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 PLET1Q6UQ28 207 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 CCDC116Q8IYX3 515 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 CPA6Q8N4T0 437 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 DNAJC5GQ8N7S2 189 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 AMER3Q8N944 861 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 CXorf40BQ96DE9 158 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 TBX5Q99593 518 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 FKBP14Q9NWM8 211 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 WBP1LQ9NX94 342 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 SNX7Q9UNH6 387 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 CLCA2Q9UQC9 943 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 SLC9A8Q9Y2E8 581 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 A3GALT2U3KPV4 340 aa11.98□□□□□ -0.49
LIG1-201ENST00000263274 CPSF4LA6NMK7 179 aaKnown RBP11.97□□□□□ -0.49
LIG1-201ENST00000263274 CPNE3O75131 537 aaKnown RBP11.97□□□□□ -0.49
LIG1-201ENST00000263274 PDE9AO76083 593 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 ADH1AP07327 375 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 AVPR1BP47901 424 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 LARS2Q15031 903 aaKnown RBP11.97□□□□□ -0.49
LIG1-201ENST00000263274 QPRTQ15274 297 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 MLIPQ5VWP3 458 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 FAM83HQ6ZRV2 1179 aaPredicted RBP11.97□□□□□ -0.49
LIG1-201ENST00000263274 PHC2Q8IXK0 858 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 ATP6V1C2Q8NEY4 427 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 KAT2AQ92830 837 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 VOPP1Q96AW1 172 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 CCDC32Q9BV29 185 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 RPRD1BQ9NQG5 326 aaKnown RBP11.97□□□□□ -0.49
LIG1-201ENST00000263274 IMP3Q9NV31 184 aaKnown RBP11.97□□□□□ -0.49
LIG1-201ENST00000263274 TXNL4BQ9NX01 149 aaKnown RBP11.97□□□□□ -0.49
LIG1-201ENST00000263274 A0A1B0GVC2 190 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 A6NIN4 97 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 HEPACAM2A8MVW5 462 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 CENPBD1B2RD01 187 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 CELP19835 753 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 APEX1P27695 318 aaKnown RBP11.97□□□□□ -0.49
LIG1-201ENST00000263274 RPS25P62851 125 aaKnown RBP11.97□□□□□ -0.49
LIG1-201ENST00000263274 TCEAL5Q5H9L2 206 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 C9orf64Q5T6V5 341 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 DDI2Q5TDH0 399 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 PGBD2Q6P3X8 592 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 SYCE2Q6PIF2 218 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 CAMKMTQ7Z624 323 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 TMC8Q8IU68 726 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 UBQLNLQ8IYU4 475 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 OR6F1Q8NGZ6 308 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 TEX47Q8TBZ9 253 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 ZBED6CLQ96FA7 236 aaPredicted RBP11.97□□□□□ -0.49
LIG1-201ENST00000263274 METTL2AQ96IZ6 378 aaKnown RBP11.97□□□□□ -0.49
LIG1-201ENST00000263274 KCTD7Q96MP8 289 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 CAPN10Q9HC96 672 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 CLEC4AQ9UMR7 237 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 GSTK1Q9Y2Q3 226 aa11.97□□□□□ -0.49
LIG1-201ENST00000263274 SERTM1A2A2V5 107 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 FOXE1O00358 373 aaPredicted RBP11.96□□□□□ -0.49
LIG1-201ENST00000263274 B3GALNT1O75752 331 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 C6P13671 934 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 MMP11P24347 488 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 MYL9P24844 172 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 CLCNKAP51800 687 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 KHDRBS2Q5VWX1 349 aaKnown RBP11.96□□□□□ -0.49
LIG1-201ENST00000263274 ZNF730Q6ZMV8 503 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 TECPR1Q7Z6L1 1165 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 NATD1Q8N6N6 113 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 SPERTQ8NA61 448 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 OR5P2Q8WZ92 322 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 TP53INP1Q96A56 240 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 RNFT2Q96EX2 444 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 PDXPQ96GD0 296 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 FERD3LQ96RJ6 166 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 SLC22A4Q9H015 551 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 C11orf54Q9H0W9 315 aaPredicted RBP11.96□□□□□ -0.49
LIG1-201ENST00000263274 HCN2Q9UL51 889 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 C2orf92A0A1B0GVN3 265 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 FAM240BA0A1B0GVZ2 78 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 FAM172BPA6NC97 362 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 FAAHO00519 579 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 SLC30A4O14863 429 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 DPM1O60762 260 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 SEMA7AO75326 666 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 RB1P06400 928 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 CCNYL3P0C7X3 344 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 DDCP20711 480 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 MMP12P39900 470 aa11.96□□□□□ -0.49
LIG1-201ENST00000263274 CRYBB2P43320 205 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms