RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 SERINC2Q96SA4 455 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 DPH7Q9BTV6 452 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 FAM86C1Q9NVL1 165 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 ADAM18Q9Y3Q7 739 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 H7C417 338 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 TIMP1P01033 207 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 OR12D1P0DN82 309 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 CSF2RAP15509 400 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 SH3BP2P78314 561 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 PIGGQ5H8A4 983 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 ABHD12BQ7Z5M8 362 aaPredicted RBP18.26■□□□□ 0.51
UPF1-201ENST00000262803 TMEM130Q8N3G9 435 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 SCGB1C1Q8TD33 95 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 BADQ92934 168 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 SLC17A9Q9BYT1 436 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 PAK1IP1Q9NWT1 392 aaPredicted RBP18.26■□□□□ 0.51
UPF1-201ENST00000262803 KCNIP1Q9NZI2 227 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 CD207Q9UJ71 328 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 SRPK3Q9UPE1 567 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 DENRO43583 198 aaKnown RBP18.26■□□□□ 0.51
UPF1-201ENST00000262803 MAP2K4P45985 399 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 SNX29P2Q8IUI4 249 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 ZDHHC1Q8WTX9 485 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 CCDC86Q9H6F5 360 aaKnown RBP18.26■□□□□ 0.51
UPF1-201ENST00000262803 ZNF696Q9H7X3 374 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 ENAMQ9NRM1 1142 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 LRP6O75581 1613 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 BRINP1O60477 761 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 MAGEA12P43365 314 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 GRK1Q15835 563 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 ERVK-18Q9QC07 812 aa18.26■□□□□ 0.51
UPF1-201ENST00000262803 POLR1CO15160 346 aaPredicted RBP18.25■□□□□ 0.51
UPF1-201ENST00000262803 PENKP01210 267 aaPredicted RBP18.25■□□□□ 0.51
UPF1-201ENST00000262803 IFNA2P01563 188 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 GJA8P48165 433 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 EFR3AQ14156 821 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 HS3ST5Q8IZT8 346 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 OR2T4Q8NH00 348 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 PGAP3Q96FM1 320 aaPredicted RBP18.25■□□□□ 0.51
UPF1-201ENST00000262803 RXFP3Q9NSD7 469 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 IFNA1P01562 189 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 DSC1Q08554 894 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 SLC35F1Q5T1Q4 408 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 RAET1LQ5VY80 246 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 CCSAPQ6IQ19 270 aaPredicted RBP18.25■□□□□ 0.51
UPF1-201ENST00000262803 ISCA2Q86U28 154 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 LAS2Q8IYD9 372 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 G3V2L1 256 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 S100A2P29034 98 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 HLCSP50747 726 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 CLDN8P56748 225 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 GALNT1Q10472 559 aaPredicted RBP18.25■□□□□ 0.51
UPF1-201ENST00000262803 SHFQ7M4L6 423 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 OR1F2PQ96R84 312 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 SMOXQ9NWM0 555 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 EFCAB7A8K855 629 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 SCAMP2O15127 329 aaKnown RBP18.25■□□□□ 0.51
UPF1-201ENST00000262803 SCO2O43819 266 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 GGT2P36268 569 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 SPINT3P49223 89 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 TAS2R38P59533 333 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 STOML3Q8TAV4 291 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 CNN2Q99439 309 aaKnown RBP18.25■□□□□ 0.51
UPF1-201ENST00000262803 NUP188Q5SRE5 1749 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 M0QZQ0 153 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 PTGESO14684 152 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 SLITRK5O94991 958 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 DHRS4L1P0CG22 281 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 PRKCAP17252 672 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 ETV4P43268 484 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 HSD17B7P56937 341 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 MLLT1Q03111 559 aaPredicted RBP18.25■□□□□ 0.51
UPF1-201ENST00000262803 MS4A15Q8N5U1 240 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 SLC37A3Q8NCC5 494 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 PROKR1Q8TCW9 393 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 ASB15Q8WXK1 588 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 FTSJ1Q9UET6 329 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 HCN2Q9UL51 889 aa18.25■□□□□ 0.51
UPF1-201ENST00000262803 PRAMEF26H0Y7S4 382 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 SOCS2O14508 198 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 EIF2S3LQ2VIR3 472 aaKnown RBP18.24■□□□□ 0.51
UPF1-201ENST00000262803 FIGLAQ6QHK4 219 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 SCML4Q8N228 414 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 PPP1R35Q8TAP8 253 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 ZC3H10Q96K80 434 aaKnown RBP18.24■□□□□ 0.51
UPF1-201ENST00000262803 SYT11Q9BT88 431 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 KCNK13Q9HB14 408 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 ZSCAN5BA6NJL1 495 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 ANKRD28O15084 1053 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 NDUFV2P19404 249 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 RANBP10Q6VN20 620 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 TRIM73Q86UV7 250 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 IL17RCQ8NAC3 791 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 KDM1BQ8NB78 822 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 FAM46BQ96A09 425 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 SLC35F4A4IF30 521 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 RBBP9O75884 186 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 ZNF806P0C7X5 589 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 ADRB3P13945 408 aa18.24■□□□□ 0.51
UPF1-201ENST00000262803 HSD17B1P14061 328 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms