RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 LRIF1Q5T3J3 769 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 FIGNL1Q6PIW4 674 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 RTL4Q6ZR62 310 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 RNF44Q7L0R7 432 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 OR52E4Q8NGH9 312 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 PHOSPHO1Q8TCT1 267 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 CCDC74AQ96AQ1 378 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 IL1RAPQ9NPH3 570 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 SNX11Q9Y5W9 270 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 MYL12BO14950 172 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 MAN1A2O60476 641 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 ARAFP10398 606 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 BMP2P12643 396 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 BSGP35613 385 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 OR1D4P47884 311 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 ST13P50502 369 aaKnown RBP10.93□□□□□ -0.66
VPS4A-201ENST00000254950 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.93□□□□□ -0.66
VPS4A-201ENST00000254950 TRAM2Q15035 370 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 SNAPC1Q16533 368 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 CRB2Q5IJ48 1285 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 ANKRD53Q8N9V6 530 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 CNDP2Q96KP4 475 aaKnown RBP10.93□□□□□ -0.66
VPS4A-201ENST00000254950 ZNF570Q96NI8 536 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 RDH12Q96NR8 316 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 PIP5K1AQ99755 562 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 CMKLR1Q99788 373 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 GLIPR2Q9H4G4 154 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 CXorf36Q9H7Y0 433 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 MTHFD2LQ9H903 347 aaPredicted RBP10.93□□□□□ -0.66
VPS4A-201ENST00000254950 PTGFRNQ9P2B2 879 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 GMPR2Q9P2T1 348 aaKnown RBP10.93□□□□□ -0.66
VPS4A-201ENST00000254950 CD300AQ9UGN4 299 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 TMX2-CTNND1H3BSU7 103 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 GMFGO60234 142 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 LINGO3P0C6S8 592 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 GPX2P18283 190 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 CNR2P34972 360 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 SELENOWP63302 87 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 YBX1P67809 324 aaKnown RBP10.93□□□□□ -0.66
VPS4A-201ENST00000254950 OGFRL1Q5TC84 451 aaPredicted RBP10.93□□□□□ -0.66
VPS4A-201ENST00000254950 GAB3Q8WWW8 586 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 AMDHD1Q96NU7 426 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 NPLQ9BXD5 320 aaPredicted RBP10.93□□□□□ -0.66
VPS4A-201ENST00000254950 SMURF2Q9HAU4 748 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 LYRM4Q9HD34 91 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 MKKSQ9NPJ1 570 aaPredicted RBP10.93□□□□□ -0.66
VPS4A-201ENST00000254950 ABI3Q9P2A4 366 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 PIKFYVEQ9Y2I7 2098 aa10.93□□□□□ -0.66
VPS4A-201ENST00000254950 SLITRK5O94991 958 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 RHCEP18577 417 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 GSTM3P21266 225 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 RPP38P78345 283 aaKnown RBP10.92□□□□□ -0.66
VPS4A-201ENST00000254950 LAPTM4AQ15012 233 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 COLEC12Q5KU26 742 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 SWT1Q5T5J6 900 aaKnown RBP10.92□□□□□ -0.66
VPS4A-201ENST00000254950 ATG14Q6ZNE5 492 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 ZZZ3Q8IYH5 903 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 OR5D16Q8NGK9 328 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 DTNBP1Q96EV8 351 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 DGCR6LQ9BY27 220 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 TBC1D23Q9NUY8 699 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 RHCGQ9UBD6 479 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 PCOLCE2Q9UKZ9 415 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 DAPP1Q9UN19 280 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 PADI2Q9Y2J8 665 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 CSNK1G3Q9Y6M4 447 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 ENPP4Q9Y6X5 453 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 SERTM1A2A2V5 107 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 OR2A25A4D2G3 310 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 FXYD1O00168 92 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 MPZL2O60487 215 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 PRKRAO75569 313 aaKnown RBP10.92□□□□□ -0.66
VPS4A-201ENST00000254950 CCNA2P20248 432 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 EMP2P54851 167 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 KIAA0040Q15053 153 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 ZNF550Q7Z398 422 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 HMGN2P46Q86SG4 172 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 ADCK1Q86TW2 530 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 CLVS1Q8IUQ0 354 aaPredicted RBP10.92□□□□□ -0.66
VPS4A-201ENST00000254950 AQP11Q8NBQ7 271 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 OR51Q1Q8NH59 317 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 OR2A14Q96R47 310 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 C14orf105Q9NVL8 296 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 SLC22A7Q9Y694 548 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 ELOA3DA6NLF2 546 aaPredicted RBP10.92□□□□□ -0.66
VPS4A-201ENST00000254950 CPSF4LA6NMK7 179 aaKnown RBP10.92□□□□□ -0.66
VPS4A-201ENST00000254950 ACOT8O14734 319 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 DBIP07108 87 aaKnown RBP10.92□□□□□ -0.66
VPS4A-201ENST00000254950 GRK6P43250 576 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 ELOA3BQ3SY89 546 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 ELOA3Q8NG57 546 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 CRB3Q9BUF7 120 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 DEFB126Q9BYW3 111 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 FAM192AQ9GZU8 254 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 USP22Q9UPT9 525 aa10.92□□□□□ -0.66
VPS4A-201ENST00000254950 LOC105369274A0A096LPK9 316 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 LOC102723532A0A0G2JNH3 316 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 A0A1W2PR48 441 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 TMEM221A6NGB7 291 aa10.91□□□□□ -0.66
VPS4A-201ENST00000254950 C17orf105B2RV13 164 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms