RNA–Protein interactions for RNA: ENST00000244303.10

HIF3A-202, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 2 BASIC

Gene HIF3A, Length 2,250 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-202ENST00000244303 SUSD6Q92537 303 aa13.59□□□□□ -0.23
HIF3A-202ENST00000244303 TRMT61AQ96FX7 289 aaKnown RBP13.59□□□□□ -0.23
HIF3A-202ENST00000244303 CEP19Q96LK0 163 aa13.59□□□□□ -0.23
HIF3A-202ENST00000244303 C17orf62Q9BQA9 187 aa13.59□□□□□ -0.23
HIF3A-202ENST00000244303 MND1Q9BWT6 205 aa13.59□□□□□ -0.23
HIF3A-202ENST00000244303 DDX31Q9H8H2 851 aaKnown RBP13.59□□□□□ -0.23
HIF3A-202ENST00000244303 SFXN1Q9H9B4 322 aa13.59□□□□□ -0.23
HIF3A-202ENST00000244303 ERVK13-1Q9NX77 482 aa13.59□□□□□ -0.23
HIF3A-202ENST00000244303 TVP23BQ9NYZ1 205 aa13.59□□□□□ -0.23
HIF3A-202ENST00000244303 PDZK1P1A8MUH7 402 aa13.59□□□□□ -0.23
HIF3A-202ENST00000244303 WWP2O00308 870 aa13.59□□□□□ -0.23
HIF3A-202ENST00000244303 STATHP02808 62 aa13.59□□□□□ -0.23
HIF3A-202ENST00000244303 SLC35G4P0C7Q5 338 aa13.59□□□□□ -0.23
HIF3A-202ENST00000244303 IL12RB1P42701 662 aa13.59□□□□□ -0.23
HIF3A-202ENST00000244303 SSR2P43308 183 aa13.59□□□□□ -0.23
HIF3A-202ENST00000244303 NR4A2P43354 598 aa13.59□□□□□ -0.23
HIF3A-202ENST00000244303 SMIM11AP58511 58 aa13.59□□□□□ -0.23
HIF3A-202ENST00000244303 CSNK1G2P78368 415 aa13.59□□□□□ -0.23
HIF3A-202ENST00000244303 LSM11P83369 360 aaKnown RBP eCLIP13.59□□□□□ -0.23
HIF3A-202ENST00000244303 PDGFRLQ15198 375 aa13.59□□□□□ -0.23
HIF3A-202ENST00000244303 NDUFAF5Q5TEU4 345 aa13.59□□□□□ -0.23
HIF3A-202ENST00000244303 CCBE1Q6UXH8 406 aaPredicted RBP13.59□□□□□ -0.23
HIF3A-202ENST00000244303 TBC1D19Q8N5T2 526 aa13.59□□□□□ -0.23
HIF3A-202ENST00000244303 ZNF764Q96H86 408 aaPredicted RBP13.59□□□□□ -0.23
HIF3A-202ENST00000244303 AMDHD1Q96NU7 426 aa13.59□□□□□ -0.23
HIF3A-202ENST00000244303 SLC30A2Q9BRI3 323 aa13.59□□□□□ -0.23
HIF3A-202ENST00000244303 BARHL1Q9BZE3 327 aa13.59□□□□□ -0.23
HIF3A-202ENST00000244303 AICDAQ9GZX7 198 aa13.59□□□□□ -0.23
HIF3A-202ENST00000244303 NT5DC2Q9H857 520 aa13.59□□□□□ -0.23
HIF3A-202ENST00000244303 SMURF1Q9HCE7 757 aa13.59□□□□□ -0.23
HIF3A-202ENST00000244303 ZCCHC3Q9NUD5 404 aaKnown RBP13.59□□□□□ -0.23
HIF3A-202ENST00000244303 C14orf119Q9NWQ9 140 aa13.59□□□□□ -0.23
HIF3A-202ENST00000244303 ADAM29Q9UKF5 820 aa13.59□□□□□ -0.23
HIF3A-202ENST00000244303 MN1Q10571 1320 aaPredicted RBP13.58□□□□□ -0.23
HIF3A-202ENST00000244303 MDC1Q14676 2089 aaKnown RBP13.58□□□□□ -0.24
HIF3A-202ENST00000244303 A0A075B6Q4 140 aa13.58□□□□□ -0.24
HIF3A-202ENST00000244303 A0A0A6YYD5 115 aa13.58□□□□□ -0.24
HIF3A-202ENST00000244303 IGKV1-8A0A0C4DH67 115 aa13.58□□□□□ -0.24
HIF3A-202ENST00000244303 GLOD5A6NK44 160 aa13.58□□□□□ -0.24
HIF3A-202ENST00000244303 C1QTNF3-AMACRE9PGA6 284 aa13.58□□□□□ -0.24
HIF3A-202ENST00000244303 LOC110117498-PIK3R3F6TDL0 507 aa13.58□□□□□ -0.24
HIF3A-202ENST00000244303 CACNB4O00305 520 aaPredicted RBP13.58□□□□□ -0.24
HIF3A-202ENST00000244303 TLX2O43763 284 aaPredicted RBP13.58□□□□□ -0.24
HIF3A-202ENST00000244303 PRKYO43930 277 aa13.58□□□□□ -0.24
HIF3A-202ENST00000244303 SLITRK5O94991 958 aa13.58□□□□□ -0.24
HIF3A-202ENST00000244303 SNX4O95219 450 aa13.58□□□□□ -0.24
HIF3A-202ENST00000244303 EPHX1P07099 455 aa13.58□□□□□ -0.24
HIF3A-202ENST00000244303 ENDOUP21128 410 aaKnown RBP13.58□□□□□ -0.24
HIF3A-202ENST00000244303 FCARP24071 287 aa13.58□□□□□ -0.24
HIF3A-202ENST00000244303 MMP11P24347 488 aa13.58□□□□□ -0.24
HIF3A-202ENST00000244303 TNFSF8P32971 234 aa13.58□□□□□ -0.24
HIF3A-202ENST00000244303 CRYBB2P43320 205 aa13.58□□□□□ -0.24
HIF3A-202ENST00000244303 ERVK-21P61565 698 aa13.58□□□□□ -0.24
HIF3A-202ENST00000244303 MLC1Q15049 377 aa13.58□□□□□ -0.24
HIF3A-202ENST00000244303 WSCD2Q2TBF2 565 aa13.58□□□□□ -0.24
HIF3A-202ENST00000244303 PIP5KL1Q5T9C9 394 aa13.58□□□□□ -0.24
HIF3A-202ENST00000244303 THOC7Q6I9Y2 204 aaKnown RBP13.58□□□□□ -0.24
HIF3A-202ENST00000244303 TANGO2Q6ICL3 276 aa13.58□□□□□ -0.24
HIF3A-202ENST00000244303 ZNF793Q6ZN11 406 aa13.58□□□□□ -0.24
HIF3A-202ENST00000244303 NANOGP1Q8N7R0 232 aa13.58□□□□□ -0.24
HIF3A-202ENST00000244303 Q8N9G6 341 aaPredicted RBP13.58□□□□□ -0.24
HIF3A-202ENST00000244303 PIK3R3Q92569 461 aa13.58□□□□□ -0.24
HIF3A-202ENST00000244303 HDAC8Q9BY41 377 aa13.58□□□□□ -0.24
HIF3A-202ENST00000244303 POLR2J2Q9GZM3 115 aaKnown RBP13.58□□□□□ -0.24
HIF3A-202ENST00000244303 TPK1Q9H3S4 243 aa13.58□□□□□ -0.24
HIF3A-202ENST00000244303 MOV10Q9HCE1 1003 aaKnown RBP13.58□□□□□ -0.24
HIF3A-202ENST00000244303 PRSS16Q9NQE7 514 aa13.58□□□□□ -0.24
HIF3A-202ENST00000244303 CRNNQ9UBG3 495 aaPredicted RBP13.58□□□□□ -0.24
HIF3A-202ENST00000244303 HCN2Q9UL51 889 aa13.58□□□□□ -0.24
HIF3A-202ENST00000244303 C2orf16Q68DN1 1984 aa13.58□□□□□ -0.24
HIF3A-202ENST00000244303 A0A1W2PRQ8 180 aa13.57□□□□□ -0.24
HIF3A-202ENST00000244303 FAM47E-STBD1D6RA91 191 aa13.57□□□□□ -0.24
HIF3A-202ENST00000244303 SSX4O60224 188 aa13.57□□□□□ -0.24
HIF3A-202ENST00000244303 EPPINO95925 133 aa13.57□□□□□ -0.24
HIF3A-202ENST00000244303 PSMA1P25786 263 aaKnown RBP13.57□□□□□ -0.24
HIF3A-202ENST00000244303 PPP2R1BP30154 601 aa13.57□□□□□ -0.24
HIF3A-202ENST00000244303 GSTM5P46439 218 aa13.57□□□□□ -0.24
HIF3A-202ENST00000244303 NCBP2P52298 156 aaKnown RBP eCLIP13.57□□□□□ -0.24
HIF3A-202ENST00000244303 PRKAG1P54619 331 aa13.57□□□□□ -0.24
HIF3A-202ENST00000244303 DEFA1P59665 94 aa13.57□□□□□ -0.24
HIF3A-202ENST00000244303 DEFA3P59666 94 aa13.57□□□□□ -0.24
HIF3A-202ENST00000244303 GPR19Q15760 415 aa13.57□□□□□ -0.24
HIF3A-202ENST00000244303 OCLNQ16625 522 aa13.57□□□□□ -0.24
HIF3A-202ENST00000244303 LRIT3Q3SXY7 679 aa13.57□□□□□ -0.24
HIF3A-202ENST00000244303 ZER1Q7Z7L7 766 aa13.57□□□□□ -0.24
HIF3A-202ENST00000244303 KRT73Q86Y46 540 aa13.57□□□□□ -0.24
HIF3A-202ENST00000244303 FAM20CQ8IXL6 584 aa13.57□□□□□ -0.24
HIF3A-202ENST00000244303 CREB3L4Q8TEY5 395 aa13.57□□□□□ -0.24
HIF3A-202ENST00000244303 FERD3LQ96RJ6 166 aa13.57□□□□□ -0.24
HIF3A-202ENST00000244303 MACROD1Q9BQ69 325 aa13.57□□□□□ -0.24
HIF3A-202ENST00000244303 YIPF4Q9BSR8 244 aa13.57□□□□□ -0.24
HIF3A-202ENST00000244303 FNDC11Q9BVV2 318 aa13.57□□□□□ -0.24
HIF3A-202ENST00000244303 PITHD1Q9GZP4 211 aaPredicted RBP13.57□□□□□ -0.24
HIF3A-202ENST00000244303 HOXD1Q9GZZ0 328 aa13.57□□□□□ -0.24
HIF3A-202ENST00000244303 KLHL31Q9H511 634 aa13.57□□□□□ -0.24
HIF3A-202ENST00000244303 XKR8Q9H6D3 395 aa13.57□□□□□ -0.24
HIF3A-202ENST00000244303 CTPS2Q9NRF8 586 aa13.57□□□□□ -0.24
HIF3A-202ENST00000244303 MAN2C1Q9NTJ4 1040 aa13.57□□□□□ -0.24
HIF3A-202ENST00000244303 OBP2AQ9NY56 170 aa13.57□□□□□ -0.24
HIF3A-202ENST00000244303 OR1A2Q9Y585 309 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms