RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 SUN3Q8TAQ9 357 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 OR5P2Q8WZ92 322 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SLC25A46Q96AG3 418 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SYT3Q9BQG1 590 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 NIPSNAP3BQ9BS92 247 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 PDZD7Q9H5P4 517 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 FBXW11Q9UKB1 542 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 MYO5BQ9ULV0 1848 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 TMEM218A2RU14 115 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 CCDC85CA6NKD9 419 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SRPX2O60687 465 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 ADORA3P0DMS8 318 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 MAT2AP31153 395 aaKnown RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 EPHX2P34913 555 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 GRK6P43250 576 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SCAPQ12770 1279 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 ALG10Q5BKT4 473 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 NIPAL3Q6P499 406 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 TEX261Q6UWH6 196 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF440Q8IYI8 595 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 PYROXD2Q8N2H3 581 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 TCEANCQ8N8B7 351 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SLC38A3Q99624 504 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 CHRDQ9H2X0 955 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 U3KQ87 197 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 TMEM72A0PK05 275 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 HRH2P25021 359 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 NFYBP25208 207 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 RNF144AP50876 292 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 EPHA4P54764 986 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 EFEMP1Q12805 493 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 PCBP2Q15366 365 aaKnown RBP eCLIP4.47□□□□□ -1.691e-9■■■■■ 28.3
SCN1A-220ENST00000641603 FAM180AQ6UWF9 173 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SSX7Q7RTT5 188 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SLC16A9Q7RTY1 509 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 DDX53Q86TM3 631 aaKnown RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 OR1J1Q8NGS3 322 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 TXNL4BQ9NX01 149 aaKnown RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 DPP7Q9UHL4 492 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 CHD4Q14839 1912 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 MT-ND4LP03901 98 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SPATA31D3P0C874 917 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 RRASP10301 218 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 IDUAP35475 653 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 EMP3P54852 163 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 WDR5P61964 334 aaKnown RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF763Q0D2J5 394 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 AANATQ16613 207 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SEZ6Q53EL9 994 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SEZ6L2Q6UXD5 910 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SPATA31D4Q6ZUB0 917 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 DTWD1Q8N5C7 304 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 TRMT10AQ8TBZ6 339 aaKnown RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 RSC1A1Q92681 617 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 OTUB2Q96DC9 234 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 MAP6Q96JE9 813 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 PAPOLGQ9BWT3 736 aaKnown RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 REV1Q9UBZ9 1251 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 RNF150Q9ULK6 438 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 TCHHQ07283 1943 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SPATA31A1Q5TZJ5 1347 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SYNDIG1LA6NDD5 238 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF587BE7ETH6 402 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 BNIP3LO60238 219 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 MT-CO2P00403 227 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 ACP2P11117 423 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 MRPL19P49406 292 aaKnown RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 LUMP51884 338 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 PSPHP78330 225 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 TLE2Q04725 743 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 PDZK1IP1Q13113 114 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 UPP1Q16831 310 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 PAN2Q504Q3 1202 aaKnown RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF546Q86UE3 836 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 CHST4Q8NCG5 386 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 OR4C15Q8NGM1 316 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 SLC2A12Q8TD20 617 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 C8orf37Q96NL8 207 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF300Q96RE9 604 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 ALOXE3Q9BYJ1 711 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 MMP28Q9H239 520 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 MCCC2Q9HCC0 563 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 POLMQ9NP87 494 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 TIMM22Q9Y584 194 aa4.47□□□□□ -1.69
SCN1A-220ENST00000641603 MED1Q15648 1581 aaPredicted RBP4.47□□□□□ -1.69
SCN1A-220ENST00000641603 A0A087WZY1 265 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 NPIPA7E9PJI5 369 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 LRATO95237 230 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 GOT2P00505 430 aaKnown RBP4.46□□□□□ -1.69
SCN1A-220ENST00000641603 NPIPA8P0DM63 369 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 FDXRP22570 491 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 HNF1BP35680 557 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 CCR9P51686 369 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 UFM1P61960 85 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 IRF9Q00978 393 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 ZNF616Q08AN1 781 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 SERINC3Q13530 473 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 CCINQ13939 588 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 GINS1Q14691 196 aa4.46□□□□□ -1.69
SCN1A-220ENST00000641603 TSSK4Q6SA08 328 aa4.46□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms