RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 SVBPQ8N300 66 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 OR4C5Q8NGB2 326 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 OR6N1Q8NGY5 312 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 GPBAR1Q8TDU6 330 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 COPS9Q8WXC6 57 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 PEX13Q92968 403 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 SLC38A4Q969I6 547 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 ADAM2Q99965 735 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 STAP2Q9UGK3 403 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 STEAP1Q9UHE8 339 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 SLC6A14Q9UN76 642 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 hCG_1807616A0A1W2PRN6 198 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 PRORSD1PA6NEY8 169 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 EDF1O60869 148 aaKnown RBP2.67□□□□□ -1.98
SCN1A-219ENST00000641575 PAK4O96013 591 aaPredicted RBP2.67□□□□□ -1.98
SCN1A-219ENST00000641575 GALTP07902 379 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 PLEKP08567 350 aaPredicted RBP2.67□□□□□ -1.98
SCN1A-219ENST00000641575 AREGP15514 252 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 EPORP19235 508 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 MATN1P21941 496 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 PRKCHP24723 683 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 NMBRP28336 390 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 PPP1CCP36873 323 aaKnown RBP2.67□□□□□ -1.98
SCN1A-219ENST00000641575 GLP1RP43220 463 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 CTSKP43235 329 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 CDK5Q00535 292 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 GALEQ14376 348 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 CRY1Q16526 586 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF630Q2M218 657 aaPredicted RBP2.67□□□□□ -1.98
SCN1A-219ENST00000641575 LIN52Q52LA3 116 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 MOB2Q70IA6 237 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 SVOPLQ8N434 492 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 TRAM1L1Q8N609 369 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 DEFB123Q8N688 67 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 TRAPPC12Q8WVT3 735 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 SELENOMQ8WWX9 145 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 SEMA4DQ92854 862 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 CHFRQ96EP1 664 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 CPXM1Q96SM3 734 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 CCDC32Q9BV29 185 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 OSBPL7Q9BZF2 842 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 RAB18Q9NP72 206 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 RLIMQ9NVW2 624 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 PCDHA3Q9Y5H8 950 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 COL22A1Q8NFW1 1626 aaPredicted RBP2.67□□□□□ -1.98
SCN1A-219ENST00000641575 SPATA31A7Q8IWB4 1347 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 CYP26A1O43174 497 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 GOSR1O95249 250 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 SERPINA6P08185 405 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 HCKP08631 526 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 FMO5P49326 533 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 RNF4P78317 190 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 SLC25A3Q00325 362 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 REEP5Q00765 189 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 MS4A2Q01362 244 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 POU4F2Q12837 409 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 PARP6Q2NL67 630 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 PARP15Q460N3 678 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 TPRG1LQ5T0D9 272 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 GRTP1Q5TC63 336 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 OR2A2Q6IF42 318 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF730Q6ZMV8 503 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 ILDR1Q86SU0 546 aaPredicted RBP2.67□□□□□ -1.98
SCN1A-219ENST00000641575 SULF2Q8IWU5 870 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 CISD2Q8N5K1 135 aaKnown RBP2.67□□□□□ -1.98
SCN1A-219ENST00000641575 CSNK2A3Q8NEV1 391 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 ZMIZ2Q8NF64 920 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 PRR7Q8TB68 274 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 ZNF398Q8TD17 642 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 AENQ8WTP8 325 aaKnown RBP2.67□□□□□ -1.98
SCN1A-219ENST00000641575 DDIT4LQ96D03 193 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 OR11A1Q9GZK7 315 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 KCNK13Q9HB14 408 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 RPS10P5Q9NQ39 176 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP2.67□□□□□ -1.98
SCN1A-219ENST00000641575 MAT2BQ9NZL9 334 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 STUB1Q9UNE7 303 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 FLVCR2Q9UPI3 526 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 SSU72P8A0A1W2PR75 194 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 A8MUI8 341 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 SULT1C2O00338 296 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 DNAJB6O75190 326 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 SH3BGRLO75368 114 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 SULT1C4O75897 302 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 AHCYP23526 432 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 CRATP43155 626 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 MAP2K3P46734 347 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 GALNT1Q10472 559 aaPredicted RBP2.67□□□□□ -1.98
SCN1A-219ENST00000641575 TROAPQ12815 778 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 DAG1Q14118 895 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 DUOXA1Q1HG43 343 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 PTCHD3Q3KNS1 767 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 GCNT6Q5T4J0 391 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 NT5DC1Q5TFE4 455 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 C11orf63Q6NUN7 778 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 MED27Q6P2C8 311 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 SLC30A10Q6XR72 485 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 GALNT5Q7Z7M9 940 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 GLB1L2Q8IW92 636 aa2.67□□□□□ -1.98
SCN1A-219ENST00000641575 COX18Q8N8Q8 333 aa2.67□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms