RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 RIDAP52758 137 aaKnown RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 PTP4A2Q12974 167 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 GARNL3Q5VVW2 1013 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 SMYD5Q6GMV2 418 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 PARS2Q7L3T8 475 aaKnown RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 SLC51AQ86UW1 340 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 RNF175Q8N4F7 328 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 SPATA6LQ8N4H0 392 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 SIRT6Q8N6T7 355 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 INO80EQ8NBZ0 244 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 OR6K6Q8NGW6 343 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 FAM110BQ8TC76 370 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 FBXL20Q96IG2 436 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 FAM84AQ96KN4 292 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 TRAPPC9Q96Q05 1148 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 ALOXE3Q9BYJ1 711 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 CHST11Q9NPF2 352 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 CLN6Q9NWW5 311 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 MARCH5Q9NX47 278 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 PPM1HQ9ULR3 514 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 BTRCQ9Y297 605 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 POLR3HQ9Y535 204 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 FADS3Q9Y5Q0 445 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 SCN1AP35498 2009 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 ANKRD36CQ5JPF3 1778 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 GTF3C1Q12789 2109 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 SERTM1A2A2V5 107 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 LIASO43766 372 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 DBIP07108 87 aaKnown RBP4.78□□□□□ -1.64
SCN1A-218ENST00000640036 PRSS56P0CW18 603 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 PECAM1P16284 738 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-218ENST00000640036 CALB2P22676 271 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 VHLP40337 213 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 RPS9P46781 194 aaKnown RBP4.78□□□□□ -1.64
SCN1A-218ENST00000640036 PPIAP62937 165 aaKnown RBP4.78□□□□□ -1.64
SCN1A-218ENST00000640036 SRSF5Q13243 272 aaKnown RBP4.78□□□□□ -1.64
SCN1A-218ENST00000640036 ZNF77Q15935 545 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 TUBA3EQ6PEY2 450 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 L3MBTL4Q8NA19 623 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 OR2L5Q8NG80 312 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 ZNF384Q8TF68 577 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 MYRFLQ96LU7 910 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 CCDC74BQ96LY2 380 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 LRRC1Q9BTT6 524 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 CD93Q9NPY3 652 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 C12orf4Q9NQ89 552 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 PAQR5Q9NXK6 330 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-218ENST00000640036 PROCRQ9UNN8 238 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 CA5BQ9Y2D0 317 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 A0A0U1RQJ8 604 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 C17orf113A0A1B0GUU1 675 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 SH2D7A6NKC9 451 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-218ENST00000640036 ITGA2BP08514 1039 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 DCAF7P61962 342 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 CCL7P80098 99 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 SLC3A1Q07837 685 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 C5orf22Q49AR2 442 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 OR9A2Q8NGT5 310 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 GIPC3Q8TF64 312 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 SEPHS2Q99611 448 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 C9orf16Q9BUW7 83 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 C1orf109Q9NX04 203 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 CMTM6Q9NX76 183 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 AASSQ9UDR5 926 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 ZNF223Q9UK11 482 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-218ENST00000640036 K7ERQ8 282 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 CCL22O00626 93 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 PIP5K1BO14986 540 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 ATG12O94817 140 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 APOL3O95236 402 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 TNFAIP8O95379 198 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 F10P00742 488 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 LINC00032P0C843 101 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 ADSSP30520 456 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 TMEM196Q5HYL7 178 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 NLRC3Q7RTR2 1065 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 SATL1Q86VE3 508 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 ZDHHC13Q8IUH4 622 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 OFCC1Q8IZS5 231 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 UMODL1-AS1Q8N2C9 162 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 ABHD11Q8NFV4 315 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 CCDC107Q8WV48 283 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 MYDGFQ969H8 173 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 SERINC2Q96SA4 455 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 CDCP1Q9H5V8 836 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 UNKLQ9H9P5 680 aaKnown RBP4.78□□□□□ -1.64
SCN1A-218ENST00000640036 WSB2Q9NYS7 404 aaPredicted RBP4.78□□□□□ -1.64
SCN1A-218ENST00000640036 DHRS7Q9Y394 339 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 SPG11Q96JI7 2443 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 NOTCH3Q9UM47 2321 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 DOCK1Q14185 1865 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 CUL9Q8IWT3 2517 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 SONP18583 2426 aaKnown RBP4.78□□□□□ -1.64
SCN1A-218ENST00000640036 C1orf226A1L170 272 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 OR52A4PA6NMU1 304 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 MANBAO00462 879 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 PLOD2O00469 737 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 ZNF749O43361 778 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 ITGA5P08648 1049 aa4.78□□□□□ -1.64
SCN1A-218ENST00000640036 C1GALT1C1LP0DN25 315 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms