RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 ZNF24P17028 368 aa17.82■□□□□ 0.44
CLN3-260ENST00000637578 BGNP21810 368 aa17.82■□□□□ 0.44
CLN3-260ENST00000637578 ARRB2P32121 409 aa17.82■□□□□ 0.44
CLN3-260ENST00000637578 SOX3P41225 446 aa17.82■□□□□ 0.44
CLN3-260ENST00000637578 CA7P43166 264 aa17.82■□□□□ 0.44
CLN3-260ENST00000637578 RBPJQ06330 500 aa17.82■□□□□ 0.44
CLN3-260ENST00000637578 PIGGQ5H8A4 983 aa17.82■□□□□ 0.44
CLN3-260ENST00000637578 ARL13AQ5H913 290 aaPredicted RBP17.82■□□□□ 0.44
CLN3-260ENST00000637578 TCHHL1Q5QJ38 904 aaPredicted RBP17.82■□□□□ 0.44
CLN3-260ENST00000637578 NDUFAF5Q5TEU4 345 aa17.82■□□□□ 0.44
CLN3-260ENST00000637578 Q6ZPB1 254 aaPredicted RBP17.82■□□□□ 0.44
CLN3-260ENST00000637578 MAMDC2Q7Z304 686 aaPredicted RBP17.82■□□□□ 0.44
CLN3-260ENST00000637578 CHERPQ8IWX8 916 aaKnown RBP17.82■□□□□ 0.44
CLN3-260ENST00000637578 PSD4Q8NDX1 1056 aa17.82■□□□□ 0.44
CLN3-260ENST00000637578 C16orf52Q8NHV5 167 aa17.82■□□□□ 0.44
CLN3-260ENST00000637578 KCNA7Q96RP8 456 aa17.82■□□□□ 0.44
CLN3-260ENST00000637578 DEPPQ9NTK1 212 aa17.82■□□□□ 0.44
CLN3-260ENST00000637578 NPIPA1Q9UND3 350 aa17.82■□□□□ 0.44
CLN3-260ENST00000637578 SLC19A2O60779 497 aa17.81■□□□□ 0.44
CLN3-260ENST00000637578 KRT6AP02538 564 aa17.81■□□□□ 0.44
CLN3-260ENST00000637578 CLPSP04118 112 aa17.81■□□□□ 0.44
CLN3-260ENST00000637578 KRT6BP04259 564 aa17.81■□□□□ 0.44
CLN3-260ENST00000637578 SERPINE1P05121 402 aa17.81■□□□□ 0.44
CLN3-260ENST00000637578 ENO1P06733 434 aaKnown RBP17.81■□□□□ 0.44
CLN3-260ENST00000637578 NEFHP12036 1026 aa17.81■□□□□ 0.44
CLN3-260ENST00000637578 KRT6CP48668 564 aa17.81■□□□□ 0.44
CLN3-260ENST00000637578 MEOX1P50221 254 aa17.81■□□□□ 0.44
CLN3-260ENST00000637578 PPP2R2AP63151 447 aa17.81■□□□□ 0.44
CLN3-260ENST00000637578 IL20RBQ6UXL0 311 aa17.81■□□□□ 0.44
CLN3-260ENST00000637578 FJX1Q86VR8 437 aa17.81■□□□□ 0.44
CLN3-260ENST00000637578 CHTF18Q8WVB6 975 aa17.81■□□□□ 0.44
CLN3-260ENST00000637578 RIT1Q92963 219 aa17.81■□□□□ 0.44
CLN3-260ENST00000637578 TSPAN10Q9H1Z9 355 aaPredicted RBP17.81■□□□□ 0.44
CLN3-260ENST00000637578 RYDENQ9NUL5 291 aaKnown RBP17.81■□□□□ 0.44
CLN3-260ENST00000637578 NMRK1Q9NWW6 199 aa17.81■□□□□ 0.44
CLN3-260ENST00000637578 VPS29Q9UBQ0 182 aa17.81■□□□□ 0.44
CLN3-260ENST00000637578 CES1P1Q9UKY3 287 aa17.81■□□□□ 0.44
CLN3-260ENST00000637578 ERVK-11Q9UQG0 969 aa17.81■□□□□ 0.44
CLN3-260ENST00000637578 DIDO1Q9BTC0 2240 aaKnown RBP17.81■□□□□ 0.44
CLN3-260ENST00000637578 A0A1W2PS29 197 aa17.8■□□□□ 0.44
CLN3-260ENST00000637578 A1L4Q6 167 aa17.8■□□□□ 0.44
CLN3-260ENST00000637578 MAPK12P53778 367 aa17.8■□□□□ 0.44
CLN3-260ENST00000637578 FOXA1P55317 472 aa17.8■□□□□ 0.44
CLN3-260ENST00000637578 SLC37A1P57057 533 aa17.8■□□□□ 0.44
CLN3-260ENST00000637578 CSTF3Q12996 717 aaKnown RBP17.8■□□□□ 0.44
CLN3-260ENST00000637578 HSP90B2PQ58FF3 399 aa17.8■□□□□ 0.44
CLN3-260ENST00000637578 OPN5Q6U736 354 aa17.8■□□□□ 0.44
CLN3-260ENST00000637578 BNC2Q6ZN30 1099 aaPredicted RBP17.8■□□□□ 0.44
CLN3-260ENST00000637578 GOLM1Q8NBJ4 401 aa17.8■□□□□ 0.44
CLN3-260ENST00000637578 OR4K14Q8NGD5 310 aa17.8■□□□□ 0.44
CLN3-260ENST00000637578 METTL6Q8TCB7 284 aa17.8■□□□□ 0.44
CLN3-260ENST00000637578 TM4SF18Q96CE8 201 aa17.8■□□□□ 0.44
CLN3-260ENST00000637578 SGCZQ96LD1 299 aa17.8■□□□□ 0.44
CLN3-260ENST00000637578 CXorf21Q9HAI6 301 aa17.8■□□□□ 0.44
CLN3-260ENST00000637578 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.8■□□□□ 0.44
CLN3-260ENST00000637578 TIMM22Q9Y584 194 aa17.8■□□□□ 0.44
CLN3-260ENST00000637578 PCDHA9Q9Y5H5 950 aa17.8■□□□□ 0.44
CLN3-260ENST00000637578 ARHGAP10A1A4S6 786 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 SERTM1A2A2V5 107 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 H3BQF6 201 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 OR10H2O60403 315 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 GUCY1B2O75343 617 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 ULK1O75385 1050 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 NADKO95544 446 aaPredicted RBP17.79■□□□□ 0.44
CLN3-260ENST00000637578 PIK3R1P27986 724 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 HMOX2P30519 316 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 SERPINB5P36952 375 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 TRA2BP62995 288 aaKnown RBP17.79■□□□□ 0.44
CLN3-260ENST00000637578 ERVK-8P63133 956 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 ZNF267Q14586 743 aaPredicted RBP17.79■□□□□ 0.44
CLN3-260ENST00000637578 LYPD8Q6UX82 237 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 RTL4Q6ZR62 310 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 SPPL2CQ8IUH8 684 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 SLC15A4Q8N697 577 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 HBEGFQ99075 208 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 SH2D2AQ9NP31 389 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 MED4Q9NPJ6 270 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 ERVK-19Q9WJR5 959 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 TRGV8A0A0C4DH27 118 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 C1orf226A1L170 272 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 OR6C76A6NM76 312 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 ITM2AO43736 263 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 ZG16O60844 167 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 LYPLA1O75608 230 aaPredicted RBP17.79■□□□□ 0.44
CLN3-260ENST00000637578 HTR6P50406 440 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 FUT7Q11130 342 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 ZNF791Q3KP31 576 aaPredicted RBP17.79■□□□□ 0.44
CLN3-260ENST00000637578 HIST2H2BCQ6DN03 193 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 CLEC6AQ6EIG7 209 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 SLC48A1Q6P1K1 146 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 GHDCQ8N2G8 530 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 C1orf52Q8N6N3 182 aaKnown RBP17.79■□□□□ 0.44
CLN3-260ENST00000637578 GBP7Q8N8V2 638 aaPredicted RBP17.79■□□□□ 0.44
CLN3-260ENST00000637578 DOK4Q8TEW6 326 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 C11orf24Q96F05 449 aaPredicted RBP17.79■□□□□ 0.44
CLN3-260ENST00000637578 CNPPD1Q9BV87 410 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 ACPTQ9BZG2 426 aa17.79■□□□□ 0.44
CLN3-260ENST00000637578 ZNF395Q9H8N7 513 aaPredicted RBP17.79■□□□□ 0.44
CLN3-260ENST00000637578 EML4Q9HC35 981 aaKnown RBP17.79■□□□□ 0.44
CLN3-260ENST00000637578 TMEM114B3SHH9 223 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms