RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 ACADMP11310 421 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 SRCP12931 536 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 ETFAP13804 333 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 KELP23276 732 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 CFL1P23528 166 aaKnown RBP3.78□□□□□ -1.8
SCN1A-214ENST00000637038 C21orf33P30042 268 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-214ENST00000637038 CD6P30203 668 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 GPC1P35052 558 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 ATP6V1E1P36543 226 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 KHKP50053 298 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 SMSP52788 366 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 PFN3P60673 137 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 PPP3R1P63098 170 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 SLC7A9P82251 487 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 PCDH1Q08174 1060 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 SPEM2Q0P670 501 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 MLLT11Q13015 90 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-214ENST00000637038 DOC2BQ14184 412 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 GBX1Q14549 363 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 ANKRD34AQ69YU3 496 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 FRMPD2BQ6IN97 320 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 USP30Q70CQ3 517 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 SZRD1Q7Z422 152 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 C17orf64Q86WR6 236 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 APCDD1Q8J025 514 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 SIMC1Q8NDZ2 872 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 PROKR2Q8NFJ6 384 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 OR9A1PQ8NGU1 263 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 OR56A3Q8NH54 315 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 WDR20Q8TBZ3 569 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 LINC01599Q8WXQ3 324 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 DIRAS2Q96HU8 199 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 ZFYVE19Q96K21 471 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 MYOCQ99972 504 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 OR51E2Q9H255 320 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 CRISPLD1Q9H336 500 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 ASAH2Q9NR71 780 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 SNTG1Q9NSN8 517 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 OBP2AQ9NY56 170 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 TAS2R7Q9NYW3 318 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 CALML5Q9NZT1 146 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 P2RX2Q9UBL9 471 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 KRT87PA6NCN2 255 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 C2orf72A6NCS6 295 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 A6NJY4 79 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 FAM171A2A8MVW0 826 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 ARHGEF33A8MVX0 844 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 RGS13O14921 159 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 TEX28O15482 410 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 SMAD6O43541 496 aaKnown RBP3.78□□□□□ -1.8
SCN1A-214ENST00000637038 MMP20O60882 483 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 NME6O75414 186 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-214ENST00000637038 ABLIM3O94929 683 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 ZNF883P0CG24 379 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 NR2F1P10589 423 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 PLA2G2AP14555 144 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 PTBP1P26599 531 aaKnown RBP eCLIP3.78□□□□□ -1.85e-7■■□□□ 13.9
SCN1A-214ENST00000637038 DDOSTP39656 456 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 XCR1P46094 333 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 MAPK12P53778 367 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 WNT3P56703 355 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 TGM3Q08188 693 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 SELENBP1Q13228 472 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 ILKQ13418 452 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 PTGES3Q15185 160 aaKnown RBP3.78□□□□□ -1.8
SCN1A-214ENST00000637038 DEF8Q6ZN54 512 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 Q6ZNB5 142 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 DBX2Q6ZNG2 339 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 BTLAQ7Z6A9 289 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 LUZP2Q86TE4 346 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 CCDC190Q86UF4 302 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 TRAPPC5Q8IUR0 188 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 GALNT12Q8IXK2 581 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 CLDN22Q8N7P3 220 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 BBS10Q8TAM1 723 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 HCAR2Q8TDS4 363 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 WFIKKN2Q8TEU8 576 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 C16orf78Q8WTQ4 265 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 BTN2A2Q8WVV5 523 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 FOXJ1Q92949 421 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 GLYATL1Q969I3 302 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 RAD51AP1Q96B01 352 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 AP2M1Q96CW1 435 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 FRMD6Q96NE9 622 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 RIOK2Q9BVS4 552 aaKnown RBP3.78□□□□□ -1.8
SCN1A-214ENST00000637038 CDADC1Q9BWV3 514 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 DPH1Q9BZG8 443 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 PITHD1Q9GZP4 211 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-214ENST00000637038 PCED1AQ9H1Q7 454 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 FANCFQ9NPI8 374 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 RPRD1BQ9NQG5 326 aaKnown RBP3.78□□□□□ -1.8
SCN1A-214ENST00000637038 DMRT3Q9NQL9 472 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 SLC6A13Q9NSD5 602 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 RBMX2Q9Y388 322 aaKnown RBP3.78□□□□□ -1.8
SCN1A-214ENST00000637038 ASB4Q9Y574 426 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 IQCMA0A1B0GVH7 501 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 PIPSLA2A3N6 862 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 OR2AG2A6NM03 316 aa3.78□□□□□ -1.8
SCN1A-214ENST00000637038 FAM170BA6NMN3 283 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms