RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 VTI1BQ9UEU0 232 aa16.59■□□□□ 0.25
CLN3-247ENST00000636351 HAO1Q9UJM8 370 aa16.59■□□□□ 0.25
CLN3-247ENST00000636351 TMED5Q9Y3A6 229 aa16.59■□□□□ 0.25
CLN3-247ENST00000636351 CROCCQ5TZA2 2017 aa16.58■□□□□ 0.25
CLN3-247ENST00000636351 DOCK10Q96BY6 2186 aa16.58■□□□□ 0.25
CLN3-247ENST00000636351 TRBV11-1A0A0K0K1C0 115 aa16.58■□□□□ 0.24
CLN3-247ENST00000636351 NPIPB8E9PQR5 432 aa16.58■□□□□ 0.24
CLN3-247ENST00000636351 JUNP05412 331 aaKnown RBP16.58■□□□□ 0.24
CLN3-247ENST00000636351 DRD2P14416 443 aa16.58■□□□□ 0.24
CLN3-247ENST00000636351 MAPK1P28482 360 aa16.58■□□□□ 0.24
CLN3-247ENST00000636351 IGLV3-21P80748 117 aaPredicted RBP16.58■□□□□ 0.24
CLN3-247ENST00000636351 C2orf80Q0P641 193 aa16.58■□□□□ 0.24
CLN3-247ENST00000636351 BIKQ13323 160 aa16.58■□□□□ 0.24
CLN3-247ENST00000636351 ISLR2Q6UXK2 745 aa16.58■□□□□ 0.24
CLN3-247ENST00000636351 ST13P4Q8IZP2 240 aaPredicted RBP16.58■□□□□ 0.24
CLN3-247ENST00000636351 KIF2BQ8N4N8 673 aa16.58■□□□□ 0.24
CLN3-247ENST00000636351 B3GNT7Q8NFL0 401 aa16.58■□□□□ 0.24
CLN3-247ENST00000636351 CLHC1Q8NHS4 586 aa16.58■□□□□ 0.24
CLN3-247ENST00000636351 NCLNQ969V3 563 aa16.58■□□□□ 0.24
CLN3-247ENST00000636351 EXOSC8Q96B26 276 aaKnown RBP16.58■□□□□ 0.24
CLN3-247ENST00000636351 PPWD1Q96BP3 646 aaKnown RBP16.58■□□□□ 0.24
CLN3-247ENST00000636351 VMP1Q96GC9 406 aa16.58■□□□□ 0.24
CLN3-247ENST00000636351 C1orf50Q9BV19 199 aa16.58■□□□□ 0.24
CLN3-247ENST00000636351 CNPPD1Q9BV87 410 aa16.58■□□□□ 0.24
CLN3-247ENST00000636351 MYNNQ9NPC7 610 aa16.58■□□□□ 0.24
CLN3-247ENST00000636351 GIMAP4Q9NUV9 329 aa16.58■□□□□ 0.24
CLN3-247ENST00000636351 HEY2Q9UBP5 337 aa16.58■□□□□ 0.24
CLN3-247ENST00000636351 COPS7AQ9UBW8 275 aa16.58■□□□□ 0.24
CLN3-247ENST00000636351 TEKT2Q9UIF3 430 aa16.58■□□□□ 0.24
CLN3-247ENST00000636351 UTS2RQ9UKP6 389 aa16.58■□□□□ 0.24
CLN3-247ENST00000636351 ENTPD4Q9Y227 616 aa16.58■□□□□ 0.24
CLN3-247ENST00000636351 ZNF780BQ9Y6R6 833 aa16.58■□□□□ 0.24
CLN3-247ENST00000636351 POLEQ07864 2286 aa16.58■□□□□ 0.24
CLN3-247ENST00000636351 A0A1W2PS29 197 aa16.57■□□□□ 0.24
CLN3-247ENST00000636351 KLF11O14901 512 aa16.57■□□□□ 0.24
CLN3-247ENST00000636351 ZG16O60844 167 aa16.57■□□□□ 0.24
CLN3-247ENST00000636351 SDC1P18827 310 aa16.57■□□□□ 0.24
CLN3-247ENST00000636351 NT5EP21589 574 aa16.57■□□□□ 0.24
CLN3-247ENST00000636351 FEN1P39748 380 aaKnown RBP16.57■□□□□ 0.24
CLN3-247ENST00000636351 XKP51811 444 aa16.57■□□□□ 0.24
CLN3-247ENST00000636351 OCRLQ01968 901 aa16.57■□□□□ 0.24
CLN3-247ENST00000636351 MFAP5Q13361 173 aa16.57■□□□□ 0.24
CLN3-247ENST00000636351 KIAA0040Q15053 153 aa16.57■□□□□ 0.24
CLN3-247ENST00000636351 ZNF750Q32MQ0 723 aa16.57■□□□□ 0.24
CLN3-247ENST00000636351 RFTN2Q52LD8 501 aaPredicted RBP16.57■□□□□ 0.24
CLN3-247ENST00000636351 FCRLBQ6BAA4 426 aa16.57■□□□□ 0.24
CLN3-247ENST00000636351 FAM180AQ6UWF9 173 aa16.57■□□□□ 0.24
CLN3-247ENST00000636351 IKBIPQ70UQ0 350 aa16.57■□□□□ 0.24
CLN3-247ENST00000636351 CRLF3Q8IUI8 442 aa16.57■□□□□ 0.24
CLN3-247ENST00000636351 SLC5A8Q8N695 610 aa16.57■□□□□ 0.24
CLN3-247ENST00000636351 CATSPER1Q8NEC5 780 aa16.57■□□□□ 0.24
CLN3-247ENST00000636351 NFAM1Q8NET5 270 aaPredicted RBP16.57■□□□□ 0.24
CLN3-247ENST00000636351 SLC2A12Q8TD20 617 aa16.57■□□□□ 0.24
CLN3-247ENST00000636351 DOK4Q8TEW6 326 aa16.57■□□□□ 0.24
CLN3-247ENST00000636351 PTPMT1Q8WUK0 201 aaPredicted RBP16.57■□□□□ 0.24
CLN3-247ENST00000636351 TSSK3Q96PN8 268 aa16.57■□□□□ 0.24
CLN3-247ENST00000636351 SLX1AQ9BQ83 275 aa16.57■□□□□ 0.24
CLN3-247ENST00000636351 MED4Q9NPJ6 270 aa16.57■□□□□ 0.24
CLN3-247ENST00000636351 SLC35E2P0CK97 266 aa16.56■□□□□ 0.24
CLN3-247ENST00000636351 CPMP14384 443 aa16.56■□□□□ 0.24
CLN3-247ENST00000636351 PORP16435 677 aaPredicted RBP16.56■□□□□ 0.24
CLN3-247ENST00000636351 DDCP20711 480 aa16.56■□□□□ 0.24
CLN3-247ENST00000636351 TACR1P25103 407 aa16.56■□□□□ 0.24
CLN3-247ENST00000636351 CLCN2P51788 898 aa16.56■□□□□ 0.24
CLN3-247ENST00000636351 HK2P52789 917 aa16.56■□□□□ 0.24
CLN3-247ENST00000636351 ABHD17BQ5VST6 288 aa16.56■□□□□ 0.24
CLN3-247ENST00000636351 FAM71E1Q6IPT2 247 aa16.56■□□□□ 0.24
CLN3-247ENST00000636351 FAM180BQ6P0A1 224 aa16.56■□□□□ 0.24
CLN3-247ENST00000636351 FJX1Q86VR8 437 aa16.56■□□□□ 0.24
CLN3-247ENST00000636351 SLC34A3Q8N130 599 aa16.56■□□□□ 0.24
CLN3-247ENST00000636351 LRRC25Q8N386 305 aaPredicted RBP16.56■□□□□ 0.24
CLN3-247ENST00000636351 MORN4Q8NDC4 146 aa16.56■□□□□ 0.24
CLN3-247ENST00000636351 RIT1Q92963 219 aa16.56■□□□□ 0.24
CLN3-247ENST00000636351 GFM2Q969S9 779 aaKnown RBP16.56■□□□□ 0.24
CLN3-247ENST00000636351 MARVELD3Q96A59 401 aa16.56■□□□□ 0.24
CLN3-247ENST00000636351 ART5Q96L15 291 aa16.56■□□□□ 0.24
CLN3-247ENST00000636351 FCRL1Q96LA6 429 aa16.56■□□□□ 0.24
CLN3-247ENST00000636351 DEFB126Q9BYW3 111 aa16.56■□□□□ 0.24
CLN3-247ENST00000636351 OLAHQ9NV23 265 aa16.56■□□□□ 0.24
CLN3-247ENST00000636351 ABI3Q9P2A4 366 aa16.56■□□□□ 0.24
CLN3-247ENST00000636351 CES1P1Q9UKY3 287 aa16.56■□□□□ 0.24
CLN3-247ENST00000636351 SLCO1B7G3V0H7 640 aa16.55■□□□□ 0.24
CLN3-247ENST00000636351 HDAC3O15379 428 aa16.55■□□□□ 0.24
CLN3-247ENST00000636351 ATP8B1O43520 1251 aa16.55■□□□□ 0.24
CLN3-247ENST00000636351 AKAP10O43572 662 aa16.55■□□□□ 0.24
CLN3-247ENST00000636351 LRATO95237 230 aa16.55■□□□□ 0.24
CLN3-247ENST00000636351 BCKDHAP12694 445 aa16.55■□□□□ 0.24
CLN3-247ENST00000636351 CSNK2A2P19784 350 aaPredicted RBP16.55■□□□□ 0.24
CLN3-247ENST00000636351 ASMTP46597 345 aa16.55■□□□□ 0.24
CLN3-247ENST00000636351 ERVK-8P63133 956 aa16.55■□□□□ 0.24
CLN3-247ENST00000636351 MAD2L1Q13257 205 aaPredicted RBP16.55■□□□□ 0.24
CLN3-247ENST00000636351 ZNF267Q14586 743 aaPredicted RBP16.55■□□□□ 0.24
CLN3-247ENST00000636351 C6orf136Q5SQH8 315 aa16.55■□□□□ 0.24
CLN3-247ENST00000636351 GALNT12Q8IXK2 581 aa16.55■□□□□ 0.24
CLN3-247ENST00000636351 SAMD14Q8IZD0 417 aaPredicted RBP16.55■□□□□ 0.24
CLN3-247ENST00000636351 LIX1Q8N485 282 aa16.55■□□□□ 0.24
CLN3-247ENST00000636351 APCDD1LQ8NCL9 501 aa16.55■□□□□ 0.24
CLN3-247ENST00000636351 OR1N1Q8NGS0 311 aa16.55■□□□□ 0.24
CLN3-247ENST00000636351 ELP5Q8TE02 316 aa16.55■□□□□ 0.24
CLN3-247ENST00000636351 THAP3Q8WTV1 239 aaPredicted RBP16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms