RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 SBSNQ6UWP8 590 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 MILR1Q7Z6M3 343 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 LILRB1Q8NHL6 650 aaPredicted RBP12.56□□□□□ -0.4
SNX1-214ENST00000625244 SPPL2AQ8TCT8 520 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 EEF1AKMT1Q8WVE0 214 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 ATG4AQ8WYN0 398 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 CAVIN3Q969G5 261 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 TNFRSF13CQ96RJ3 184 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 KRT12Q99456 494 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 KLHL4Q9C0H6 718 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 L2HGDHQ9H9P8 463 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 PELI2Q9HAT8 420 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 TEX10Q9NXF1 929 aaPredicted RBP12.56□□□□□ -0.4
SNX1-214ENST00000625244 HEY2Q9UBP5 337 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 GDF2Q9UK05 429 aaPredicted RBP12.56□□□□□ -0.4
SNX1-214ENST00000625244 MAGED1Q9Y5V3 778 aaPredicted RBP12.56□□□□□ -0.4
SNX1-214ENST00000625244 SAR1BQ9Y6B6 198 aa12.56□□□□□ -0.4
SNX1-214ENST00000625244 MALRD1Q5VYJ5 2156 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 TP53I11O14683 189 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 LIASO43766 372 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 CGAP01215 116 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 CRHP06850 196 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 DANCRP0C864 163 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 TBXA2RP21731 343 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 STIP1P31948 543 aaKnown RBP12.55□□□□□ -0.4
SNX1-214ENST00000625244 PAFAH1B1P43034 410 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 ETF1P62495 437 aaKnown RBP12.55□□□□□ -0.4
SNX1-214ENST00000625244 SIRPAP78324 504 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 SP140Q13342 867 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 SNX1Q13596 522 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 RPS6KA2Q15349 733 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 CCNG2Q16589 344 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 ZNF470Q6ECI4 717 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 NXPE4Q6UWF7 544 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 ENPP6Q6UWR7 440 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 GSTA5Q7RTV2 222 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 TMPRSS11BQ86T26 416 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 DENND6AQ8IWF6 608 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 TRIM42Q8IWZ5 723 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 C17orf53Q8N3J3 647 aaPredicted RBP12.55□□□□□ -0.4
SNX1-214ENST00000625244 CCDC89Q8N998 374 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 ZNF610Q8N9Z0 462 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 ACTRT1Q8TDG2 376 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 C1orf54Q8WWF1 131 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 PPWD1Q96BP3 646 aaKnown RBP12.55□□□□□ -0.4
SNX1-214ENST00000625244 C1orf159Q96HA4 380 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 SERINC2Q96SA4 455 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 WWTR1Q9GZV5 400 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 CCDC68Q9H2F9 335 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 ARL15Q9NXU5 204 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 BFARQ9NZS9 450 aa12.55□□□□□ -0.4
SNX1-214ENST00000625244 YLPM1P49750 1951 aaKnown RBP12.54□□□□□ -0.4
SNX1-214ENST00000625244 A0A088AWK7 358 aa12.54□□□□□ -0.4
SNX1-214ENST00000625244 FAM234BA2RU67 622 aa12.54□□□□□ -0.4
SNX1-214ENST00000625244 KIF2AO00139 706 aaPredicted RBP12.54□□□□□ -0.4
SNX1-214ENST00000625244 UBFD1O14562 309 aaKnown RBP12.54□□□□□ -0.4
SNX1-214ENST00000625244 HCRTR2O43614 444 aa12.54□□□□□ -0.4
SNX1-214ENST00000625244 LMX1BO60663 402 aa12.54□□□□□ -0.4
SNX1-214ENST00000625244 TBX6O95947 436 aaPredicted RBP12.54□□□□□ -0.4
SNX1-214ENST00000625244 HIST1H2AGP0C0S8 130 aaPredicted RBP12.54□□□□□ -0.4
SNX1-214ENST00000625244 COX7A2P14406 83 aa12.54□□□□□ -0.4
SNX1-214ENST00000625244 ZNF16P17020 682 aaPredicted RBP12.54□□□□□ -0.4
SNX1-214ENST00000625244 HIST1H2ADP20671 130 aa12.54□□□□□ -0.4
SNX1-214ENST00000625244 ZNF10P21506 573 aaPredicted RBP12.54□□□□□ -0.4
SNX1-214ENST00000625244 IGFBP5P24593 272 aa12.54□□□□□ -0.4
SNX1-214ENST00000625244 GCKP35557 465 aa12.54□□□□□ -0.4
SNX1-214ENST00000625244 GMPRP36959 345 aa12.54□□□□□ -0.4
SNX1-214ENST00000625244 CASP3P42574 277 aa12.54□□□□□ -0.4
SNX1-214ENST00000625244 STT3AP46977 705 aa12.54□□□□□ -0.4
SNX1-214ENST00000625244 NPY2RP49146 381 aa12.54□□□□□ -0.4
SNX1-214ENST00000625244 TIAL1Q01085 375 aaKnown RBP eCLIP12.54□□□□□ -0.4
SNX1-214ENST00000625244 FUT7Q11130 342 aa12.54□□□□□ -0.4
SNX1-214ENST00000625244 FAM174BQ3ZCQ3 159 aa12.54□□□□□ -0.4
SNX1-214ENST00000625244 SCIMPQ6UWF3 145 aa12.54□□□□□ -0.4
SNX1-214ENST00000625244 P4HA3Q7Z4N8 544 aa12.54□□□□□ -0.4
SNX1-214ENST00000625244 OR4N5Q8IXE1 308 aa12.54□□□□□ -0.4
SNX1-214ENST00000625244 PALM2Q8IXS6 379 aa12.54□□□□□ -0.4
SNX1-214ENST00000625244 RAB3IL1Q8TBN0 382 aa12.54□□□□□ -0.4
SNX1-214ENST00000625244 CCT6BQ92526 530 aa12.54□□□□□ -0.4
SNX1-214ENST00000625244 TMEM41AQ96HV5 264 aa12.54□□□□□ -0.4
SNX1-214ENST00000625244 HIST1H2AHQ96KK5 128 aa12.54□□□□□ -0.4
SNX1-214ENST00000625244 C16orf45Q96MC5 204 aaPredicted RBP12.54□□□□□ -0.4
SNX1-214ENST00000625244 HIST1H2AJQ99878 128 aa12.54□□□□□ -0.4
SNX1-214ENST00000625244 RHNO1Q9BSD3 238 aa12.54□□□□□ -0.4
SNX1-214ENST00000625244 H2AFJQ9BTM1 129 aa12.54□□□□□ -0.4
SNX1-214ENST00000625244 WWOXQ9NZC7 414 aa12.54□□□□□ -0.4
SNX1-214ENST00000625244 RNF14Q9UBS8 474 aa12.54□□□□□ -0.4
SNX1-214ENST00000625244 SSX4O60224 188 aa12.53□□□□□ -0.4
SNX1-214ENST00000625244 ZSCAN5DPP0CG00 497 aa12.53□□□□□ -0.4
SNX1-214ENST00000625244 LHX2P50458 406 aa12.53□□□□□ -0.4
SNX1-214ENST00000625244 GFRA1P56159 465 aa12.53□□□□□ -0.4
SNX1-214ENST00000625244 LOXL1Q08397 574 aaPredicted RBP12.53□□□□□ -0.4
SNX1-214ENST00000625244 FAPQ12884 760 aa12.53□□□□□ -0.4
SNX1-214ENST00000625244 GPS1Q13098 491 aa12.53□□□□□ -0.4
SNX1-214ENST00000625244 RCN2Q14257 317 aa12.53□□□□□ -0.4
SNX1-214ENST00000625244 EBPQ15125 230 aaKnown RBP12.53□□□□□ -0.4
SNX1-214ENST00000625244 OASLQ15646 514 aaKnown RBP12.53□□□□□ -0.4
SNX1-214ENST00000625244 KBTBD12Q3ZCT8 623 aa12.53□□□□□ -0.4
SNX1-214ENST00000625244 CYB5R2Q6BCY4 276 aa12.53□□□□□ -0.4
SNX1-214ENST00000625244 ABHD17CQ6PCB6 329 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms