RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 PANX1Q96RD7 426 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 TUBB6Q9BUF5 446 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 TMEM121BQ9BXQ6 578 aaPredicted RBP13.41□□□□□ -0.26
UPF1-211ENST00000600868 SIRT3Q9NTG7 399 aaPredicted RBP13.41□□□□□ -0.26
UPF1-211ENST00000600868 ARL8BQ9NVJ2 186 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 MAT2BQ9NZL9 334 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 TAGLN3Q9UI15 199 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 ERVK-11Q9UQG0 969 aa13.41□□□□□ -0.26
UPF1-211ENST00000600868 MRPS18BQ9Y676 258 aaKnown RBP13.41□□□□□ -0.26
UPF1-211ENST00000600868 A0A087WV62 115 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 MED19A0JLT2 244 aaPredicted RBP13.4□□□□□ -0.26
UPF1-211ENST00000600868 A8MUA0 341 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 C17orf105B2RV13 164 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 RFXANKO14593 260 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 DYRK3O43781 588 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 PLOD3O60568 738 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 ERN1O75460 977 aaKnown RBP13.4□□□□□ -0.26
UPF1-211ENST00000600868 NPPAP01160 153 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 ZCCHC18P0CG32 403 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 TNNI3P19429 210 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 OTX2P32243 289 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 GPC1P35052 558 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 CDK9P50750 372 aaKnown RBP13.4□□□□□ -0.26
UPF1-211ENST00000600868 HSPB3Q12988 150 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 IL10RAQ13651 578 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 LTB4RQ15722 352 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 LRIF1Q5T3J3 769 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 C6orf163Q5TEZ5 329 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 REP15Q6BDI9 236 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 KIRREL2Q6UWL6 708 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 RAB43Q86YS6 212 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 PCYOX1LQ8NBM8 494 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 ADCY4Q8NFM4 1077 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 OR4A15Q8NGL6 344 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 ADAMTS17Q8TE56 1095 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 DAZLQ92904 295 aaKnown RBP13.4□□□□□ -0.26
UPF1-211ENST00000600868 ELP4Q96EB1 424 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 NSL1Q96IY1 281 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 IP6K3Q96PC2 410 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 PHF12Q96QT6 1004 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 LPAR4Q99677 370 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 WDR77Q9BQA1 342 aaPredicted RBP13.4□□□□□ -0.26
UPF1-211ENST00000600868 INPP5KQ9BT40 448 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 TRIM4Q9C037 500 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 ZNF700Q9H0M5 742 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 CXorf36Q9H7Y0 433 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 NTMQ9P121 344 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 PTGFRNQ9P2B2 879 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 MAP10Q9P2G4 905 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 ZNF639Q9UID6 485 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 PPIEQ9UNP9 301 aaKnown RBP13.4□□□□□ -0.26
UPF1-211ENST00000600868 SSUH2Q9Y2M2 353 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 CLCA3PQ9Y6N3 262 aa13.4□□□□□ -0.26
UPF1-211ENST00000600868 A0A096LPI6 279 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 IGHV1-45A0A0A0MS14 117 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 IGHV3-20A0A0C4DH32 117 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 SAGE2PA6NJ88 616 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 MRASO14807 208 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 KCNH1O95259 989 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 CPSF4O95639 269 aaKnown RBP13.39□□□□□ -0.27
UPF1-211ENST00000600868 DDAH2O95865 285 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 CT62P0C5K7 136 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 COX6A1P12074 109 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 S1PR1P21453 382 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 PTPN6P29350 595 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 SOX18P35713 384 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 MNAT1P51948 309 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 EEF1A2Q05639 463 aaKnown RBP13.39□□□□□ -0.27
UPF1-211ENST00000600868 FUT7Q11130 342 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 PCOLCEQ15113 449 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 CRTC2Q53ET0 693 aaPredicted RBP13.39□□□□□ -0.27
UPF1-211ENST00000600868 C6orf10Q5SRN2 563 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 FHL5Q5TD97 284 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 PAPD4Q6PIY7 484 aaKnown RBP13.39□□□□□ -0.27
UPF1-211ENST00000600868 FAM111BQ6SJ93 734 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 TMEM107Q6UX40 140 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 DLEU7Q6UYE1 221 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 TMEM64Q6YI46 380 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 MRGPREQ86SM8 312 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 VWA5B2Q8N398 1253 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 TRIML2Q8N7C3 387 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 MORN4Q8NDC4 146 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 OR11G2Q8NGC1 345 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 SFXN5Q8TD22 340 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 KAT2AQ92830 837 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 C8orf44Q96CB5 159 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 SENP5Q96HI0 755 aaPredicted RBP13.39□□□□□ -0.27
UPF1-211ENST00000600868 NAF1Q96HR8 494 aaKnown RBP13.39□□□□□ -0.27
UPF1-211ENST00000600868 FBXL20Q96IG2 436 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 ART5Q96L15 291 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 NPAS2Q99743 824 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 MESP1Q9BRJ9 268 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 PAIP1Q9H074 479 aaKnown RBP13.39□□□□□ -0.27
UPF1-211ENST00000600868 EFCAB1Q9HAE3 211 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 VPS4AQ9UN37 437 aa13.39□□□□□ -0.27
UPF1-211ENST00000600868 C19orf53Q9UNZ5 99 aaPredicted RBP13.39□□□□□ -0.27
UPF1-211ENST00000600868 CEP295Q9C0D2 2601 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 AIM2O14862 343 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 KLK10O43240 276 aa13.38□□□□□ -0.27
UPF1-211ENST00000600868 EMC8O43402 210 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms