RNA–Protein interactions for RNA: ENST00000600026.5

LTBP4-227, Transcript of latent transforming growth factor beta binding protein 4, human

TSL 3

Gene LTBP4, Length 723 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LTBP4-227	ENST00000600026	CPEB2	Q7Z5Q1	589 aa	Known RBP	20.53	■□□□□ 0.88
LTBP4-227	ENST00000600026	SNX32	Q86XE0	403 aa		20.53	■□□□□ 0.88
LTBP4-227	ENST00000600026	OR4N5	Q8IXE1	308 aa		20.53	■□□□□ 0.88
LTBP4-227	ENST00000600026	ZFP28	Q8NHY6	868 aa		20.53	■□□□□ 0.88
LTBP4-227	ENST00000600026	ANKRD9	Q96BM1	317 aa	Predicted RBP	20.53	■□□□□ 0.88
LTBP4-227	ENST00000600026	NDUFAF1	Q9Y375	327 aa		20.53	■□□□□ 0.88
LTBP4-227	ENST00000600026	LOC100653049	A0A140TA62	436 aa		20.52	■□□□□ 0.88
LTBP4-227	ENST00000600026		A0A1W2PP18	115 aa		20.52	■□□□□ 0.88
LTBP4-227	ENST00000600026	MASP2	O00187	686 aa		20.52	■□□□□ 0.88
LTBP4-227	ENST00000600026	KRT34	O76011	436 aa		20.52	■□□□□ 0.88
LTBP4-227	ENST00000600026	CPM	P14384	443 aa		20.52	■□□□□ 0.88
LTBP4-227	ENST00000600026	MPI	P34949	423 aa		20.52	■□□□□ 0.88
LTBP4-227	ENST00000600026	FEN1	P39748	380 aa	Known RBP	20.52	■□□□□ 0.88
LTBP4-227	ENST00000600026	OR4D2	P58180	307 aa		20.52	■□□□□ 0.88
LTBP4-227	ENST00000600026	CHAF1B	Q13112	559 aa		20.52	■□□□□ 0.88
LTBP4-227	ENST00000600026	MAPKAPK3	Q16644	382 aa		20.52	■□□□□ 0.88
LTBP4-227	ENST00000600026	PRSS53	Q2L4Q9	553 aa		20.52	■□□□□ 0.88
LTBP4-227	ENST00000600026	MMEL1	Q495T6	779 aa		20.52	■□□□□ 0.88
LTBP4-227	ENST00000600026	VPS26B	Q4G0F5	336 aa		20.52	■□□□□ 0.88
LTBP4-227	ENST00000600026	VPS33A	Q96AX1	596 aa		20.52	■□□□□ 0.88
LTBP4-227	ENST00000600026	CNRIP1	Q96F85	164 aa	Predicted RBP	20.52	■□□□□ 0.88
LTBP4-227	ENST00000600026	ZBED6CL	Q96FA7	236 aa	Predicted RBP	20.52	■□□□□ 0.88
LTBP4-227	ENST00000600026	FER1L6-AS2	Q96M78	137 aa		20.52	■□□□□ 0.88
LTBP4-227	ENST00000600026	WDR77	Q9BQA1	342 aa	Predicted RBP	20.52	■□□□□ 0.88
LTBP4-227	ENST00000600026	PELO	Q9BRX2	385 aa	Known RBP	20.52	■□□□□ 0.88
LTBP4-227	ENST00000600026	ALOXE3	Q9BYJ1	711 aa		20.52	■□□□□ 0.88
LTBP4-227	ENST00000600026	ZNF700	Q9H0M5	742 aa		20.52	■□□□□ 0.88
LTBP4-227	ENST00000600026	ACSS1	Q9NUB1	689 aa	Predicted RBP	20.52	■□□□□ 0.88
LTBP4-227	ENST00000600026	LEF1	Q9UJU2	399 aa	Predicted RBP	20.52	■□□□□ 0.88
LTBP4-227	ENST00000600026	PCDHGB4	Q9UN71	923 aa		20.52	■□□□□ 0.88
LTBP4-227	ENST00000600026	NSG1	A0A0A6YYJ2	146 aa		20.51	■□□□□ 0.87
LTBP4-227	ENST00000600026	MYOCOS	A0A1B0GUC4	107 aa		20.51	■□□□□ 0.87
LTBP4-227	ENST00000600026	PRSS51	A0A1B0GVH4	220 aa		20.51	■□□□□ 0.87
LTBP4-227	ENST00000600026		A0A1W2PRB8	838 aa		20.51	■□□□□ 0.87
LTBP4-227	ENST00000600026	BBIP1	A8MTZ0	92 aa		20.51	■□□□□ 0.87
LTBP4-227	ENST00000600026	MYO1G	B0I1T2	1018 aa		20.51	■□□□□ 0.87
LTBP4-227	ENST00000600026	RNASET2	O00584	256 aa	Known RBP	20.51	■□□□□ 0.87
LTBP4-227	ENST00000600026	SEC24D	O94855	1032 aa	Predicted RBP	20.51	■□□□□ 0.87
LTBP4-227	ENST00000600026	HP	P00738	406 aa		20.51	■□□□□ 0.87
LTBP4-227	ENST00000600026	CAPN3	P20807	821 aa		20.51	■□□□□ 0.87
LTBP4-227	ENST00000600026	RRAD	P55042	308 aa		20.51	■□□□□ 0.87
LTBP4-227	ENST00000600026	MANF	P55145	182 aa	Known RBP	20.51	■□□□□ 0.87
LTBP4-227	ENST00000600026	IGLV3-21	P80748	117 aa	Predicted RBP	20.51	■□□□□ 0.87
LTBP4-227	ENST00000600026	SOWAHC	Q53LP3	525 aa	Predicted RBP	20.51	■□□□□ 0.87
LTBP4-227	ENST00000600026	DCAF10	Q5QP82	559 aa		20.51	■□□□□ 0.87
LTBP4-227	ENST00000600026	NDUFAF7	Q7L592	441 aa		20.51	■□□□□ 0.87
LTBP4-227	ENST00000600026	LRRC25	Q8N386	305 aa	Predicted RBP	20.51	■□□□□ 0.87
LTBP4-227	ENST00000600026	POU5F2	Q8N7G0	328 aa		20.51	■□□□□ 0.87
LTBP4-227	ENST00000600026	TMEM102	Q8N9M5	508 aa	Predicted RBP	20.51	■□□□□ 0.87
LTBP4-227	ENST00000600026	CIDEC	Q96AQ7	238 aa	Predicted RBP	20.51	■□□□□ 0.87
LTBP4-227	ENST00000600026	TUBB6	Q9BUF5	446 aa		20.51	■□□□□ 0.87
LTBP4-227	ENST00000600026	ZNF160	Q9HCG1	818 aa		20.51	■□□□□ 0.87
LTBP4-227	ENST00000600026	TAGLN3	Q9UI15	199 aa		20.51	■□□□□ 0.87
LTBP4-227	ENST00000600026	KCNMB2	Q9Y691	235 aa		20.51	■□□□□ 0.87
LTBP4-227	ENST00000600026		A8MUA0	341 aa		20.5	■□□□□ 0.87
LTBP4-227	ENST00000600026	EBAG9	O00559	213 aa		20.5	■□□□□ 0.87
LTBP4-227	ENST00000600026	SLC35E2	P0CK97	266 aa		20.5	■□□□□ 0.87
LTBP4-227	ENST00000600026	FRK	P42685	505 aa	Predicted RBP	20.5	■□□□□ 0.87
LTBP4-227	ENST00000600026	NCBP2	P52298	156 aa	Known RBP eCLIP	20.5	■□□□□ 0.87
LTBP4-227	ENST00000600026	WNT3	P56703	355 aa		20.5	■□□□□ 0.87
LTBP4-227	ENST00000600026	PHC1	P78364	1004 aa		20.5	■□□□□ 0.87
LTBP4-227	ENST00000600026	PLIN5	Q00G26	463 aa		20.5	■□□□□ 0.87
LTBP4-227	ENST00000600026	CEBPE	Q15744	281 aa		20.5	■□□□□ 0.87
LTBP4-227	ENST00000600026	TBR1	Q16650	682 aa		20.5	■□□□□ 0.87
LTBP4-227	ENST00000600026	MPEG1	Q2M385	716 aa		20.5	■□□□□ 0.87
LTBP4-227	ENST00000600026	FAM180B	Q6P0A1	224 aa		20.5	■□□□□ 0.87
LTBP4-227	ENST00000600026	BORA	Q6PGQ7	559 aa		20.5	■□□□□ 0.87
LTBP4-227	ENST00000600026	PAPD4	Q6PIY7	484 aa	Known RBP	20.5	■□□□□ 0.87
LTBP4-227	ENST00000600026	OR5P2	Q8WZ92	322 aa		20.5	■□□□□ 0.87
LTBP4-227	ENST00000600026	RBM18	Q96H35	190 aa	Known RBP	20.5	■□□□□ 0.87
LTBP4-227	ENST00000600026	NSL1	Q96IY1	281 aa		20.5	■□□□□ 0.87
LTBP4-227	ENST00000600026	ITCH	Q96J02	903 aa		20.5	■□□□□ 0.87
LTBP4-227	ENST00000600026	ZNF681	Q96N22	645 aa		20.5	■□□□□ 0.87
LTBP4-227	ENST00000600026	DGAT2	Q96PD7	388 aa		20.5	■□□□□ 0.87
LTBP4-227	ENST00000600026	SLC52A3	Q9NQ40	469 aa		20.5	■□□□□ 0.87
LTBP4-227	ENST00000600026	ARL8B	Q9NVJ2	186 aa		20.5	■□□□□ 0.87
LTBP4-227	ENST00000600026	BTNL2	Q9UIR0	455 aa		20.5	■□□□□ 0.87
LTBP4-227	ENST00000600026	MED13	Q9UHV7	2174 aa		20.5	■□□□□ 0.87
LTBP4-227	ENST00000600026		A0A1W2PS29	197 aa		20.49	■□□□□ 0.87
LTBP4-227	ENST00000600026	SAGE2P	A6NJ88	616 aa		20.49	■□□□□ 0.87
LTBP4-227	ENST00000600026	OR10H2	O60403	315 aa		20.49	■□□□□ 0.87
LTBP4-227	ENST00000600026	CPSF4	O95639	269 aa	Known RBP	20.49	■□□□□ 0.87
LTBP4-227	ENST00000600026	IFNA16	P05015	189 aa		20.49	■□□□□ 0.87
LTBP4-227	ENST00000600026	CD1E	P15812	388 aa		20.49	■□□□□ 0.87
LTBP4-227	ENST00000600026	MLC1	Q15049	377 aa		20.49	■□□□□ 0.87
LTBP4-227	ENST00000600026	ZNF750	Q32MQ0	723 aa		20.49	■□□□□ 0.87
LTBP4-227	ENST00000600026	COQ5	Q5HYK3	327 aa		20.49	■□□□□ 0.87
LTBP4-227	ENST00000600026	C6orf163	Q5TEZ5	329 aa		20.49	■□□□□ 0.87
LTBP4-227	ENST00000600026	APLF	Q8IW19	511 aa	Predicted RBP	20.49	■□□□□ 0.87
LTBP4-227	ENST00000600026	CCDC116	Q8IYX3	515 aa		20.49	■□□□□ 0.87
LTBP4-227	ENST00000600026	ST13P4	Q8IZP2	240 aa	Predicted RBP	20.49	■□□□□ 0.87
LTBP4-227	ENST00000600026	AMER2	Q8N7J2	671 aa		20.49	■□□□□ 0.87
LTBP4-227	ENST00000600026	EXTL1	Q92935	676 aa		20.49	■□□□□ 0.87
LTBP4-227	ENST00000600026	AMDHD1	Q96NU7	426 aa		20.49	■□□□□ 0.87
LTBP4-227	ENST00000600026	LPAR4	Q99677	370 aa		20.49	■□□□□ 0.87
LTBP4-227	ENST00000600026	ING2	Q9H160	280 aa		20.49	■□□□□ 0.87
LTBP4-227	ENST00000600026	ADAP2	Q9NPF8	381 aa		20.49	■□□□□ 0.87
LTBP4-227	ENST00000600026	PNO1	Q9NRX1	252 aa	Known RBP	20.49	■□□□□ 0.87
LTBP4-227	ENST00000600026	NUP214	P35658	2090 aa	Predicted RBP	20.49	■□□□□ 0.87
LTBP4-227	ENST00000600026	SCN2B	O60939	215 aa		20.48	■□□□□ 0.87

Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms